miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00052;lin-4;ABRQ01276450.1/576-508 9813:Procavia capensis (cape
rock hyrax)
Length = 69
Score = 121 bits (61), Expect = 2e-27
Identities = 67/69 (97%)
Strand = Plus / Plus
Query: 9 tctgggtccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggttcttg 68
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1 tctgggtccctgagaccctttaacctgtgaggatgtccagggtcacaggtgaggttcttg 60
Query: 69 ggagcctgg 77
|||||||||
Sbjct: 61 ggagcctgg 69
>RF00052;lin-4;AAWZ01007717.1/33048-32980 28377:Anolis
carolinensis (green anole)
Length = 69
Score = 61.9 bits (31), Expect = 1e-09
Identities = 54/59 (91%), Gaps = 2/59 (3%)
Strand = Plus / Plus
Query: 14 gtccctgagaccctttaacctgtgaggacatccag-ggtcacaggtgaggttcttggga 71
||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||
Sbjct: 6 gtccctgagaccctt-aacctgtgaggaagcccagaggtcacaggtgaggttcttggga 63
>RF00052;lin-4;BX005154.6/49745-49678 7955:Danio rerio (zebrafish)
Length = 68
Score = 61.9 bits (31), Expect = 1e-09
Identities = 56/63 (88%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 9 tctgggtccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggttcttg 68
|||| ||||||||||||||| ||||||||| | | |||| ||||||||||||||| ||||
Sbjct: 1 tctgtgtccctgagaccctt-aacctgtgatgtcttccaaggtcacaggtgaggtccttg 59
Query: 69 gga 71
|||
Sbjct: 60 gga 62
>RF00052;lin-4;BX539313.4/20117-20184 7955:Danio rerio (zebrafish)
Length = 68
Score = 44.1 bits (22), Expect = 3e-04
Identities = 44/50 (88%), Gaps = 1/50 (2%)
Strand = Plus / Plus
Query: 14 gtccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggt 63
||||||||||||| ||||||||||||| || | |||||||||||||||
Sbjct: 6 gtccctgagaccc-ttaacctgtgaggtcaaactaggtcacaggtgaggt 54
>RF00052;lin-4;CAAE01015022.1/41722-41789 99883:Tetraodon
nigroviridis
Length = 68
Score = 44.1 bits (22), Expect = 3e-04
Identities = 50/58 (86%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 14 gtccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggttcttggga 71
||||||||||||||| ||||||||| || | | ||||||||||||||| |||||||
Sbjct: 6 gtccctgagaccctt-aacctgtgataacgtgaaaggtcacaggtgaggtccttggga 62
>RF00052;lin-4;BAAF04118326.1/2083-2017 8090:Oryzias latipes
(Japanese medaka)
Length = 67
Score = 44.1 bits (22), Expect = 3e-04
Identities = 51/58 (87%), Gaps = 2/58 (3%)
Strand = Plus / Plus
Query: 14 gtccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggttcttggga 71
||||||||||||||| |||||| || || || ||||||||||||||||| |||||||
Sbjct: 6 gtccctgagaccctt-aacctgcgatga-atgaagggtcacaggtgaggtccttggga 61
