miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AP004259.2/7530-7458 39947:Oryza sativa Japonica
Group
Length = 73
Score = 48.1 bits (24), Expect = 6e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 232 tctttttgggacggagggagtata 255
||||||||||||||||||||||||
Sbjct: 48 tctttttgggacggagggagtata 71
>RF01058;MIR806;ABXC01001640.1/20344-20113 4558:Sorghum bicolor
(sorghum)
Length = 232
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 232 tctttttgggacggagggagtat 254
|||||||||||||||||||||||
Sbjct: 23 tctttttgggacggagggagtat 1
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 232 tctttttgggacggagggagtat 254
|||||||||||||||||||||||
Sbjct: 210 tctttttgggacggagggagtat 232
>RF00906;MIR1122;AAAA02032841.1/5550-5441 39946:Oryza sativa Indica
Group
Length = 110
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 232 tctttttgggacggagggagtat 254
|||||||||||||||||||||||
Sbjct: 26 tctttttgggacggagggagtat 4
>RF00906;MIR1122;AK288546.1/1340-1246 39947:Oryza sativa Japonica
Group
Length = 95
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 235 ttttgggacggagggagtataac 257
|||||||||||||||||||||||
Sbjct: 73 ttttgggacggagggagtataac 95
>RF00906;MIR1122;AACV01013579.1/19751-19640 39947:Oryza sativa
Japonica Group
Length = 112
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 8 ttaatactacctccgtcccaaaa 30
|||||||||||||||||||||||
Sbjct: 112 ttaatactacctccgtcccaaaa 90
>RF00906;MIR1122;AP008213.1/29571801-29571647 39947:Oryza sativa
Japonica Group
Length = 155
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 8 ttaatactacctccgtcccaaaa 30
|||||||||||||||||||||||
Sbjct: 155 ttaatactacctccgtcccaaaa 133
>RF00906;MIR1122;AP008214.1/27846174-27846285 39947:Oryza sativa
Japonica Group
Length = 112
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 8 ttaatactacctccgtcccaaaa 30
|||||||||||||||||||||||
Sbjct: 112 ttaatactacctccgtcccaaaa 90
>RF00906;MIR1122;AP008210.1/27511419-27511308 39947:Oryza sativa
Japonica Group
Length = 112
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 8 ttaatactacctccgtcccaaaa 30
|||||||||||||||||||||||
Sbjct: 112 ttaatactacctccgtcccaaaa 90
>RF01058;MIR806;ABXC01000117.1/227422-227180 4558:Sorghum bicolor
(sorghum)
Length = 243
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 232 tctttttgggacggagggagta 253
||||||||||||||||||||||
Sbjct: 23 tctttttgggacggagggagta 2
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 232 tctttttgggacggagggagta 253
||||||||||||||||||||||
Sbjct: 221 tctttttgggacggagggagta 242
>RF01058;MIR806;ABXC01006731.1/44817-44575 4558:Sorghum bicolor
(sorghum)
Length = 243
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 232 tctttttgggacggagggagta 253
||||||||||||||||||||||
Sbjct: 23 tctttttgggacggagggagta 2
>RF01058;MIR806;AACV01000141.1/35700-35458 39947:Oryza sativa
Japonica Group
Length = 243
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 232 tctttttgggacggagggagta 253
||||||||||||||||||||||
Sbjct: 23 tctttttgggacggagggagta 2
>RF00906;MIR1122;ABXC01002132.1/397783-397672 4558:Sorghum bicolor
(sorghum)
Length = 112
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 232 tctttttgggacggagggagta 253
||||||||||||||||||||||
Sbjct: 87 tctttttgggacggagggagta 108
>RF00906;MIR1122;AY491681.1/77211-77302 4568:Triticum monococcum
Length = 92
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 235 ttttgggacggagggagtataa 256
||||||||||||||||||||||
Sbjct: 70 ttttgggacggagggagtataa 91
>RF00906;MIR1122;FJ184990.1/3303-3406 4565:Triticum aestivum (bread
wheat)
Length = 104
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 235 ttttgggacggagggagtataa 256
||||||||||||||||||||||
Sbjct: 23 ttttgggacggagggagtataa 2
>RF00906;MIR1122;AF488415.1/78603-78755 4568:Triticum monococcum
Length = 153
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 235 ttttgggacggagggagtataa 256
||||||||||||||||||||||
Sbjct: 131 ttttgggacggagggagtataa 152
>RF00906;MIR1122;FJ491378.1/4581-4466 4550:Secale cereale (rye)
Length = 116
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 235 ttttgggacggagggagtataa 256
||||||||||||||||||||||
Sbjct: 94 ttttgggacggagggagtataa 115
>RF00906;MIR1122;AF521177.1/81577-81474 4513:Hordeum vulgare
Length = 104
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 235 ttttgggacggagggagtataa 256
||||||||||||||||||||||
Sbjct: 82 ttttgggacggagggagtataa 103
>RF00906;MIR1122;EU096089.1/14944-15085 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 142
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 235 ttttgggacggagggagtataa 256
||||||||||||||||||||||
Sbjct: 120 ttttgggacggagggagtataa 141
>RF00906;MIR1122;EU282250.1/1190-1294 52152:Elymus repens
Length = 105
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 235 ttttgggacggagggagtataa 256
||||||||||||||||||||||
Sbjct: 23 ttttgggacggagggagtataa 2
>RF00906;MIR1122;EU282239.1/1196-1300 52152:Elymus repens
Length = 105
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 235 ttttgggacggagggagtataa 256
||||||||||||||||||||||
Sbjct: 23 ttttgggacggagggagtataa 2
>RF00906;MIR1122;EU282251.1/1314-1209 52152:Elymus repens
Length = 106
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 235 ttttgggacggagggagtataa 256
||||||||||||||||||||||
Sbjct: 84 ttttgggacggagggagtataa 105
>RF00906;MIR1122;AAAA02029963.1/5445-5312 39946:Oryza sativa Indica
Group
Length = 134
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 235 ttttgggacggagggagtataa 256
||||||||||||||||||||||
Sbjct: 112 ttttgggacggagggagtataa 133
>RF00906;MIR1122;AAAA02012747.1/1212-1288 39946:Oryza sativa Indica
Group
Length = 77
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 234 tttttgggacggagggagtata 255
||||||||||||||||||||||
Sbjct: 54 tttttgggacggagggagtata 75
>RF00906;MIR1122;AL713943.3/124714-124851 4530:Oryza sativa (rice)
Length = 138
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 234 tttttgggacggagggagtata 255
||||||||||||||||||||||
Sbjct: 115 tttttgggacggagggagtata 136
>RF00906;MIR1122;AAAA02004642.1/60119-60040 39946:Oryza sativa
Indica Group
Length = 80
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 234 tttttgggacggagggagtata 255
||||||||||||||||||||||
Sbjct: 57 tttttgggacggagggagtata 78
>RF00906;MIR1122;AACV01013952.1/21314-21199 39947:Oryza sativa
Japonica Group
Length = 116
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 234 tttttgggacggagggagtata 255
||||||||||||||||||||||
Sbjct: 93 tttttgggacggagggagtata 114
>RF00906;MIR1122;CR855084.1/66223-66112 4530:Oryza sativa (rice)
Length = 112
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 234 tttttgggacggagggagtata 255
||||||||||||||||||||||
Sbjct: 89 tttttgggacggagggagtata 110
>RF00906;MIR1122;AP008216.1/16569819-16569686 39947:Oryza sativa
Japonica Group
Length = 134
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 235 ttttgggacggagggagtataa 256
||||||||||||||||||||||
Sbjct: 112 ttttgggacggagggagtataa 133
>RF00906;MIR1122;AP006171.2/9738-9583 39947:Oryza sativa Japonica
Group
Length = 156
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 232 tctttttgggacggagggagta 253
||||||||||||||||||||||
Sbjct: 26 tctttttgggacggagggagta 5
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 232 tctttttgggacggagggagta 253
||||||||||||||||||||||
Sbjct: 131 tctttttgggacggagggagta 152
>RF00906;MIR1122;AP008210.1/17746245-17746133 39947:Oryza sativa
Japonica Group
Length = 113
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 234 tttttgggacggagggagtata 255
||||||||||||||||||||||
Sbjct: 90 tttttgggacggagggagtata 111
>RF00906;MIR1122;AL831801.4/77594-77709 4530:Oryza sativa (rice)
Length = 116
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 235 ttttgggacggagggagtataa 256
||||||||||||||||||||||
Sbjct: 23 ttttgggacggagggagtataa 2
>RF00906;MIR1122;AP008210.1/26129905-26129741 39947:Oryza sativa
Japonica Group
Length = 165
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 234 tttttgggacggagggagtata 255
||||||||||||||||||||||
Sbjct: 142 tttttgggacggagggagtata 163
>RF00906;MIR1122;AACV01010145.1/3884-4048 39947:Oryza sativa
Japonica Group
Length = 165
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 234 tttttgggacggagggagtata 255
||||||||||||||||||||||
Sbjct: 142 tttttgggacggagggagtata 163
>RF00906;MIR1122;AAAA02014383.1/51051-51164 39946:Oryza sativa
Indica Group
Length = 114
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 234 tttttgggacggagggagtata 255
||||||||||||||||||||||
Sbjct: 24 tttttgggacggagggagtata 3
>RF00906;MIR1122;AP008218.1/21039366-21039229 39947:Oryza sativa
Japonica Group
Length = 138
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 234 tttttgggacggagggagtata 255
||||||||||||||||||||||
Sbjct: 24 tttttgggacggagggagtata 3
>RF00906;MIR1122;AC025905.3/382-457 4530:Oryza sativa (rice)
Length = 76
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 234 tttttgggacggagggagtata 255
||||||||||||||||||||||
Sbjct: 53 tttttgggacggagggagtata 74
>RF00906;MIR1122;AP008216.1/14356287-14356423 39947:Oryza sativa
Japonica Group
Length = 137
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 234 tttttgggacggagggagtata 255
||||||||||||||||||||||
Sbjct: 24 tttttgggacggagggagtata 3
>RF00906;MIR1122;AACV01018362.1/12376-12241 39947:Oryza sativa
Japonica Group
Length = 136
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 232 tctttttgggacggagggagta 253
||||||||||||||||||||||
Sbjct: 26 tctttttgggacggagggagta 5
>RF00906;MIR1122;AACV01015141.1/40750-40841 39947:Oryza sativa
Japonica Group
Length = 92
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 232 tctttttgggacggagggagta 253
||||||||||||||||||||||
Sbjct: 26 tctttttgggacggagggagta 5
>RF00906;MIR1122;AAAA02029631.1/6082-5948 39946:Oryza sativa Indica
Group
Length = 135
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 234 tttttgggacggagggagtata 255
||||||||||||||||||||||
Sbjct: 112 tttttgggacggagggagtata 133
>RF00906;MIR1122;AAAA02007660.1/3740-3838 39946:Oryza sativa Indica
Group
Length = 99
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 235 ttttgggacggagggagtataa 256
||||||||||||||||||||||
Sbjct: 23 ttttgggacggagggagtataa 2
>RF00906;MIR1122;AP003412.4/28754-28834 39947:Oryza sativa Japonica
Group
Length = 81
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 234 tttttgggacggagggagtata 255
||||||||||||||||||||||
Sbjct: 58 tttttgggacggagggagtata 79
