miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00248;mir-148;ABRQ01001566.1/8621-8537 9813:Procavia capensis
(cape rock hyrax)
Length = 85
Score = 129 bits (65), Expect = 6e-30
Identities = 68/69 (98%)
Strand = Plus / Plus
Query: 11 ggcccaggttctgtgatacactccgactcgggctctggagcagtcagtgcatgacagaac 70
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 10 ggcccaggttctgtgatacactcagactcgggctctggagcagtcagtgcatgacagaac 69
Query: 71 ttgggcccg 79
|||||||||
Sbjct: 70 ttgggcccg 78
>RF00248;mir-148;AAFR03029848.1/1033-1118 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 86
Score = 107 bits (54), Expect = 2e-23
Identities = 63/66 (95%)
Strand = Plus / Plus
Query: 11 ggcccaggttctgtgatacactccgactcgggctctggagcagtcagtgcatgacagaac 70
|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 10 ggcccaggttctgtgatacactccgacttagactctggagcagtcagtgcatgacagaac 69
Query: 71 ttgggc 76
||||||
Sbjct: 70 ttgggc 75
>RF00248;mir-148;CR450718.10/98432-98517 7955:Danio rerio
(zebrafish)
Length = 86
Score = 56.0 bits (28), Expect = 8e-08
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 52 agtcagtgcatgacagaacttgggcccggaaggacc 87
||||||||||||||||||||| |||||||| |||||
Sbjct: 51 agtcagtgcatgacagaactttggcccggacggacc 86
>RF00248;mir-148;CU104777.4/16075-15990 7955:Danio rerio
(zebrafish)
Length = 86
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 18 gttctgtgatacactccgactc 39
||||||||||||||||||||||
Sbjct: 18 gttctgtgatacactccgactc 39
