miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00650;mir-153;BAAE01047906.1/23-109 8090:Oryzias latipes
(Japanese medaka)
Length = 87
Score = 155 bits (78), Expect = 1e-37
Identities = 84/86 (97%)
Strand = Plus / Plus
Query: 2 gcggtggccagtgtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagt 61
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 gcggttgccagtgtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagt 61
Query: 62 cacaaaagtgatcattggaaactgtg 87
||||||||||||||||||| ||||||
Sbjct: 62 cacaaaagtgatcattggagactgtg 87
>RF00650;mir-153;AAWZ01013157.1/56717-56632 28377:Anolis
carolinensis (green anole)
Length = 86
Score = 91.7 bits (46), Expect = 1e-18
Identities = 65/70 (92%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 10 cagtgtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaaag 69
|||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct: 10 cagtgtcatttttgtgat-ttgcagctagtaatcctggcccagttgcatagtcacaaaag 68
Query: 70 tgatcattgg 79
||||||||||
Sbjct: 69 tgatcattgg 78
>RF00650;mir-153;ABRQ01035369.1/2287-2202 9813:Procavia capensis
(cape rock hyrax)
Length = 86
Score = 79.8 bits (40), Expect = 5e-15
Identities = 65/72 (90%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 8 gccagtgtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaa 67
|||||||||||||||||||| | |||||||||| | | | |||||||||||||||||||
Sbjct: 8 gccagtgtcatttttgtgatct-gcagctagtattctcactccagttgcatagtcacaaa 66
Query: 68 agtgatcattgg 79
||||||||||||
Sbjct: 67 agtgatcattgg 78
>RF00650;mir-153;ABQF01010730.1/5361-5446 59729:Taeniopygia
guttata
Length = 86
Score = 75.8 bits (38), Expect = 8e-14
Identities = 60/66 (90%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 14 gtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaaagtgat 73
|||||||||||||| |||||||||||||| || |||||||||||||||||||||||||
Sbjct: 14 gtcatttttgtgat-ttgcagctagtaatctggctccagttgcatagtcacaaaagtgat 72
Query: 74 cattgg 79
| ||||
Sbjct: 73 cgttgg 78
>RF00650;mir-153;BAAF04013663.1/2456-2371 8090:Oryzias latipes
(Japanese medaka)
Length = 86
Score = 61.9 bits (31), Expect = 1e-09
Identities = 62/71 (87%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 9 ccagtgtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaaa 68
||||||||||||||||| | |||||||||||| | || ||||||||||||||||||||
Sbjct: 9 ccagtgtcatttttgtggt-ttgcagctagtactctggctccagttgcatagtcacaaaa 67
Query: 69 gtgatcattgg 79
||| ||||||
Sbjct: 68 atgagcattgg 78
>RF00650;mir-153;BX323042.7/121254-121169 7955:Danio rerio
(zebrafish)
Length = 86
Score = 50.1 bits (25), Expect = 5e-06
Identities = 50/57 (87%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 12 gtgtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaaa 68
|||||||||||||| | |||||||||||| | || ||||||||||||||||||||
Sbjct: 12 gtgtcatttttgtggt-ttgcagctagtagtctggttccagttgcatagtcacaaaa 67
>RF00650;mir-153;AANH01011406.1/2584-2499 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 86
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 49 ccagttgcatagtcacaaaagtgatcat 76
|||||||||||||||||||| |||||||
Sbjct: 48 ccagttgcatagtcacaaaaatgatcat 75
>RF00650;mir-153;AAGJ02018792.1/5926-5834 7668:Strongylocentrotus
purpuratus
Length = 93
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 51 agttgcatagtcacaaaagtgat 73
|||||||||||||||||||||||
Sbjct: 59 agttgcatagtcacaaaagtgat 81
>RF00650;mir-153;AABS01000027.1/231997-232081 7719:Ciona
intestinalis
Length = 85
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 51 agttgcatagtcacaaaagtgatcat 76
||||||||||| ||||||||||||||
Sbjct: 49 agttgcatagtaacaaaagtgatcat 74
