miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00076;mir-181;ABRQ01065895.1/818-744 9813:Procavia capensis
(cape rock hyrax)
Length = 75
Score = 131 bits (66), Expect = 2e-30
Identities = 69/70 (98%)
Strand = Plus / Plus
Query: 19 tttgggggaacattcaacctgtcggtgagtttgggcagctcaggcaaaccatcgaccgtt 78
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1 tttgggggaacattcaacctgtcggtgagtttgggcagcacaggcaaaccatcgaccgtt 60
Query: 79 gagtggaccc 88
||||||||||
Sbjct: 61 gagtggaccc 70
>RF00076;mir-181;ABRO01089478.1/2095-2021 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 75
Score = 101 bits (51), Expect = 2e-21
Identities = 66/71 (92%)
Strand = Plus / Plus
Query: 23 ggggaacattcaacctgtcggtgagtttgggcagctcaggcaaaccatcgaccgttgagt 82
|||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||
Sbjct: 5 ggggaacattcaacctgtcggtgagtttgggcagttcagacaaaccaccgaccgttgagt 64
Query: 83 ggaccctgaga 93
| |||| ||||
Sbjct: 65 gtacccggaga 75
>RF00076;mir-181;ABQO010301058.1/1056-1132 9315:Macropus eugenii
(tammar wallaby)
Length = 77
Score = 99.6 bits (50), Expect = 7e-21
Identities = 70/74 (94%), Gaps = 2/74 (2%)
Strand = Plus / Plus
Query: 19 tttgggggaacattcaac-ctgtcggtgagtttgggcagctca-ggcaaaccatcgaccg 76
|||||||||||||||||| ||||||||||||||| |||||| | ||||||||||||||||
Sbjct: 1 tttgggggaacattcaacgctgtcggtgagtttgagcagctgaaggcaaaccatcgaccg 60
Query: 77 ttgagtggaccctg 90
||||||||||||||
Sbjct: 61 ttgagtggaccctg 74
>RF00076;mir-181;AAYZ01335535.1/4210-4136 9978:Ochotona princeps
(American pika)
Length = 75
Score = 95.6 bits (48), Expect = 1e-19
Identities = 66/72 (91%)
Strand = Plus / Plus
Query: 21 tgggggaacattcaacctgtcggtgagtttgggcagctcaggcaaaccatcgaccgttga 80
||||||||||||||||| |||||||||||||| |||||||||||||||| |||||||
Sbjct: 3 tgggggaacattcaaccagtcggtgagtttggaggcctcaggcaaaccatcggccgttga 62
Query: 81 gtggaccctgag 92
||||||||||||
Sbjct: 63 gtggaccctgag 74
>RF00076;mir-181;AAPN01204145.1/856-780 9258:Ornithorhynchus
anatinus (platypus)
Length = 77
Score = 63.9 bits (32), Expect = 4e-10
Identities = 64/72 (88%), Gaps = 2/72 (2%)
Strand = Plus / Plus
Query: 19 tttgggggaacattcaac-ctgtcggtgagtttgggcagctcagg-caaaccatcgaccg 76
|||||||||||||||||| |||||||||||||||||||| ||| |||||| ||||||
Sbjct: 1 tttgggggaacattcaacgctgtcggtgagtttgggcagtagaggttaaaccaccgaccg 60
Query: 77 ttgagtggaccc 88
||||||| ||||
Sbjct: 61 ttgagtgtaccc 72
>RF00076;mir-181;CAAE01007782.1/1794-1718 99883:Tetraodon
nigroviridis
Length = 77
Score = 46.1 bits (23), Expect = 9e-05
Identities = 30/31 (96%), Gaps = 1/31 (3%)
Strand = Plus / Plus
Query: 23 ggggaacattcaac-ctgtcggtgagtttgg 52
|||||||||||||| ||||||||||||||||
Sbjct: 5 ggggaacattcaacgctgtcggtgagtttgg 35
>RF00076;mir-181;ABRR01288494.1/77-2 30538:Lama pacos (alpaca)
Length = 76
Score = 44.1 bits (22), Expect = 4e-04
Identities = 29/30 (96%), Gaps = 1/30 (3%)
Strand = Plus / Plus
Query: 25 ggaacattcaac-ctgtcggtgagtttggg 53
|||||||||||| |||||||||||||||||
Sbjct: 7 ggaacattcaacgctgtcggtgagtttggg 36
>RF00076;mir-181;ABRO01503714.1/705-629 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 77
Score = 44.1 bits (22), Expect = 4e-04
Identities = 29/30 (96%), Gaps = 1/30 (3%)
Strand = Plus / Plus
Query: 25 ggaacattcaac-ctgtcggtgagtttggg 53
|||||||||||| |||||||||||||||||
Sbjct: 7 ggaacattcaacgctgtcggtgagtttggg 36
>RF00076;mir-181;CU914488.12/799-875 7955:Danio rerio (zebrafish)
Length = 77
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 63 caaaccatcgaccgttgagtggaccctgag 92
|||||||||||||||||| || ||||||||
Sbjct: 47 caaaccatcgaccgttgactgtaccctgag 76
>RF00076;mir-181;AANH01011358.1/4650-4577 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 74
Score = 44.1 bits (22), Expect = 4e-04
Identities = 29/30 (96%), Gaps = 1/30 (3%)
Strand = Plus / Plus
Query: 23 ggggaacattcaac-ctgtcggtgagtttg 51
|||||||||||||| |||||||||||||||
Sbjct: 5 ggggaacattcaacgctgtcggtgagtttg 34
>RF00076;mir-181;BAAE01046132.1/387-313 8090:Oryzias latipes
(Japanese medaka)
Length = 75
Score = 44.1 bits (22), Expect = 4e-04
Identities = 29/30 (96%), Gaps = 1/30 (3%)
Strand = Plus / Plus
Query: 23 ggggaacattcaac-ctgtcggtgagtttg 51
|||||||||||||| |||||||||||||||
Sbjct: 5 ggggaacattcaacgctgtcggtgagtttg 34
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 64 aaaccatcgaccgttgagtggaccctgaga 93
||||||||||||||||| || |||||||||
Sbjct: 46 aaaccatcgaccgttgactgtaccctgaga 75
