miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00702;mir-182;AAGU02431695.1/2312-2228 9785:Loxodonta africana
(African savanna elephant)
Length = 85
Score = 137 bits (69), Expect = 3e-32
Identities = 69/69 (100%)
Strand = Plus / Plus
Query: 25 tttggcaatggtagaactcacactggtgaggtaatgggatccggtggttctagacttgcc 84
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 tttggcaatggtagaactcacactggtgaggtaatgggatccggtggttctagacttgcc 70
Query: 85 aactacggg 93
|||||||||
Sbjct: 71 aactacggg 79
>RF00702;mir-182;ABGA01212254.1/9177-9093 9601:Pongo abelii
(Sumatran orangutan)
Length = 85
Score = 133 bits (67), Expect = 5e-31
Identities = 79/83 (95%)
Strand = Plus / Plus
Query: 17 cccctgtttttggcaatggtagaactcacactggtgaggtaatgggatccggtggttcta 76
|||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 3 cccccgtttttggcaatggtagaactcacactggtgaggtaacaggatccggtggttcta 62
Query: 77 gacttgccaactacggggcgagg 99
||||||||||||| |||||||||
Sbjct: 63 gacttgccaactatggggcgagg 85
>RF00702;mir-182;AAIY01755693.1/720-804 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 85
Score = 127 bits (64), Expect = 3e-29
Identities = 67/68 (98%)
Strand = Plus / Plus
Query: 25 tttggcaatggtagaactcacactggtgaggtaatgggatccggtggttctagacttgcc 84
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 11 tttggcaatggtagaactcacactggtgaggaaatgggatccggtggttctagacttgcc 70
Query: 85 aactacgg 92
||||||||
Sbjct: 71 aactacgg 78
>RF00702;mir-182;AAVX01309390.1/833-917 7868:Callorhinchus milii
(ghost shark)
Length = 85
Score = 117 bits (59), Expect = 3e-26
Identities = 68/71 (95%)
Strand = Plus / Plus
Query: 20 ctgtttttggcaatggtagaactcacactggtgaggtaatgggatccggtggttctagac 79
|||| |||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 6 ctgtgtttggcaatggtagaactcacactggtgagatagtgggatccggtggttctagac 65
Query: 80 ttgccaactac 90
|||||||||||
Sbjct: 66 ttgccaactac 76
>RF00702;mir-182;AAYZ01439986.1/1308-1225 9978:Ochotona princeps
(American pika)
Length = 84
Score = 113 bits (57), Expect = 5e-25
Identities = 64/65 (98%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 25 tttggcaatggtagaactcacactggtgaggtaatgggatccggtggttctagacttgcc 84
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 11 tttggcaatggtagaactcacactggtgaggt-atgggatccggtggttctagacttgcc 69
Query: 85 aacta 89
|||||
Sbjct: 70 aacta 74
>RF00702;mir-182;BAAE01056755.1/3488-3572 8090:Oryzias latipes
(Japanese medaka)
Length = 85
Score = 107 bits (54), Expect = 3e-23
Identities = 63/66 (95%)
Strand = Plus / Plus
Query: 25 tttggcaatggtagaactcacactggtgaggtaatgggatccggtggttctagacttgcc 84
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 11 tttggcaatggtagaactcacactggtgaggtagatggatccggtggttctagacttgcc 70
Query: 85 aactac 90
||||||
Sbjct: 71 aactac 76
>RF00702;mir-182;AABR04001545.1/73147-73063 10116:Rattus
norvegicus (Norway rat)
Length = 85
Score = 103 bits (52), Expect = 5e-22
Identities = 64/68 (94%)
Strand = Plus / Plus
Query: 22 gtttttggcaatggtagaactcacactggtgaggtaatgggatccggtggttctagactt 81
|||||||||||||||||||||||||| ||| |||||| |||| |||||||||||||||||
Sbjct: 8 gtttttggcaatggtagaactcacaccggtaaggtaacgggacccggtggttctagactt 67
Query: 82 gccaacta 89
||||||||
Sbjct: 68 gccaacta 75
>RF00702;mir-182;AANH01001637.1/239950-240034 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 85
Score = 69.9 bits (35), Expect = 7e-12
Identities = 56/63 (88%)
Strand = Plus / Plus
Query: 25 tttggcaatggtagaactcacactggtgaggtaatgggatccggtggttctagacttgcc 84
||||||||||||||||||||| |||||| | | ||||||||||||||||||||||||
Sbjct: 11 tttggcaatggtagaactcactctggtgggctggaaggatccggtggttctagacttgcc 70
Query: 85 aac 87
|||
Sbjct: 71 aac 73
>RF00702;mir-182;BAAF04047675.1/12269-12354 8090:Oryzias latipes
(Japanese medaka)
Length = 86
Score = 58.0 bits (29), Expect = 3e-08
Identities = 58/66 (87%), Gaps = 5/66 (7%)
Strand = Plus / Plus
Query: 25 tttggcaatggtagaactcacactggtgaggtaatgg---gatccggtggttctagactt 81
||||||||||||||||||||| |||||| || ||| ||||||||||||||||||||
Sbjct: 11 tttggcaatggtagaactcactctggtg--gtgctggaaggatccggtggttctagactt 68
Query: 82 gccaac 87
||||||
Sbjct: 69 gccaac 74
