miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00697;mir-186;AAGU02261059.1/4229-4143 9785:Loxodonta africana
(African savanna elephant)
Length = 87
Score = 145 bits (73), Expect = 1e-34
Identities = 82/85 (96%)
Strand = Plus / Plus
Query: 2 gcttgtaactttccaaagaattctccttttgggctttctggttttattttaagcccaaag 61
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 3 gcttataactttccaaagaattctccttttgggctttctgattttattttaagcccaaag 62
Query: 62 gtgaatttcttgggaagtttgagct 86
|||||||| ||||||||||||||||
Sbjct: 63 gtgaattttttgggaagtttgagct 87
>RF00697;mir-186;ABRQ01113918.1/782-866 9813:Procavia capensis
(cape rock hyrax)
Length = 85
Score = 145 bits (73), Expect = 1e-34
Identities = 82/85 (96%)
Strand = Plus / Plus
Query: 1 tgcttgtaactttccaaagaattctccttttgggctttctggttttattttaagcccaaa 60
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1 tgcttataactttccaaagaattctccttttgggctttctgattttattttaagcccaaa 60
Query: 61 ggtgaatttcttgggaagtttgagc 85
||||||||| |||||||||||||||
Sbjct: 61 ggtgaattttttgggaagtttgagc 85
>RF00697;mir-186;ABRO01098600.1/541-624 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 84
Score = 111 bits (56), Expect = 1e-24
Identities = 79/86 (91%), Gaps = 3/86 (3%)
Strand = Plus / Plus
Query: 1 tgcttgtaactttccaaagaattctccttttgggctttctggttttattttaagcccaaa 60
||||| ||||||||||||||||||||||||||||||||||| || | |||||||||||
Sbjct: 2 tgcttataactttccaaagaattctccttttgggctttctgctt---tattaagcccaaa 58
Query: 61 ggtgaatttcttgggaagtttgagct 86
||||||||| ||||||||||||||||
Sbjct: 59 ggtgaattttttgggaagtttgagct 84
>RF00697;mir-186;AAPN01067101.1/12973-13059 9258:Ornithorhynchus
anatinus (platypus)
Length = 87
Score = 79.8 bits (40), Expect = 5e-15
Identities = 70/80 (87%)
Strand = Plus / Plus
Query: 7 taactttccaaagaattctccttttgggctttctggttttattttaagcccaaaggtgaa 66
|||||||||||||||||||||||||||||||||| || | ||||||||||||||
Sbjct: 8 taactttccaaagaattctccttttgggctttctatgcttggtcacagcccaaaggtgaa 67
Query: 67 tttcttgggaagtttgagct 86
||| ||||||||||||||||
Sbjct: 68 ttttttgggaagtttgagct 87
>RF00697;mir-186;AAFR03042129.1/13240-13326 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 87
Score = 79.8 bits (40), Expect = 5e-15
Identities = 69/76 (90%), Gaps = 2/76 (2%)
Strand = Plus / Plus
Query: 12 ttccaaagaattctccttttgggctttctggtt-ttattttaagcccaaaggtgaatttc 70
||||||||||||||||||||||||||| || || ||| ||| |||||||||||||||||
Sbjct: 13 ttccaaagaattctccttttgggcttt-tgattcttaatttcagcccaaaggtgaatttt 71
Query: 71 ttgggaagtttgagct 86
|||||| |||||||||
Sbjct: 72 ttgggatgtttgagct 87
>RF00697;mir-186;AAPN01201756.1/3297-3387 9258:Ornithorhynchus
anatinus (platypus)
Length = 91
Score = 54.0 bits (27), Expect = 3e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 51 taagcccaaaggtgaatttcttgggaagtttgagc 85
||||||||||||||||||| |||| ||||||||||
Sbjct: 57 taagcccaaaggtgaatttgttggaaagtttgagc 91
