miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00672;mir-190;AANN01313225.1/1014-1098 9365:Erinaceus europaeus
(western European hedgehog)
Length = 85
Score = 161 bits (81), Expect = 2e-39
Identities = 84/85 (98%)
Strand = Plus / Plus
Query: 1 tgcaggcctctgtgtgatatgtttgatatattaggttgttatttaatccaactatatatc 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1 tgcaggcctctgtgtgatatgtttgatatattaggttgttatttgatccaactatatatc 60
Query: 61 aaacatattcctacagtgtcttgcc 85
|||||||||||||||||||||||||
Sbjct: 61 aaacatattcctacagtgtcttgcc 85
>RF00672;mir-190;AAVX01574962.1/139-55 7868:Callorhinchus milii
(ghost shark)
Length = 85
Score = 123 bits (62), Expect = 4e-28
Identities = 74/78 (94%)
Strand = Plus / Plus
Query: 8 ctctgtgtgatatgtttgatatattaggttgttatttaatccaactatatatcaaacata 67
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 8 ctctgtgtgatatgtttgatatattaggttgttattaaagccaactatatatcaaacata 67
Query: 68 ttcctacagtgtcttgcc 85
|||||| |||||| ||||
Sbjct: 68 ttcctatagtgtcctgcc 85
>RF00672;mir-190;BAAE01125523.1/2749-2664 8090:Oryzias latipes
(Japanese medaka)
Length = 86
Score = 105 bits (53), Expect = 9e-23
Identities = 75/81 (92%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 1 tgcaggcctctgtgtgatatgtttgatatattaggttgttatttaatcc-aactatatat 59
|||||| |||||| ||||||||||||||||||||||||| ||| | ||| ||||||||||
Sbjct: 1 tgcagggctctgtctgatatgtttgatatattaggttgtaattcagtcccaactatatat 60
Query: 60 caaacatattcctacagtgtc 80
|||||||||||||||||||||
Sbjct: 61 caaacatattcctacagtgtc 81
>RF00672;mir-190;AAVX01028763.1/1639-1724 7868:Callorhinchus milii
(ghost shark)
Length = 86
Score = 50.1 bits (25), Expect = 5e-06
Identities = 53/61 (86%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 10 ctgtgtgatatgtttgatatattaggttgttatttaatc-caactatatatcaaacatat 68
|||| ||||||||||| ||| ||||||||||| | || | |||| |||||||||||||||
Sbjct: 10 ctgtctgatatgtttgctatgttaggttgttactcaaactcaacgatatatcaaacatat 69
Query: 69 t 69
|
Sbjct: 70 t 70
>RF00672;mir-190;AAPN01024655.1/497-583 9258:Ornithorhynchus
anatinus (platypus)
Length = 87
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/35 (94%), Gaps = 2/35 (5%)
Strand = Plus / Plus
Query: 7 cctctgtgtgatatgtttgatatattaggttgtta 41
||||||||||||||||||| ||||||||||||||
Sbjct: 7 cctctgtgtgatatgtttg--atattaggttgtta 39
>RF00672;mir-190;AAVX01176080.1/200-287 7868:Callorhinchus milii
(ghost shark)
Length = 88
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 8 ctctgtgtgatatgtttgatat 29
||||||||||||||||||||||
Sbjct: 8 ctctgtgtgatatgtttgatat 29
