miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00640;MIR167_1;AASG02005785.1/15088-15180 3988:Ricinus communis
(castor bean)
Length = 93
Score = 63.9 bits (32), Expect = 5e-10
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 86 agatcagatcatgtggcagtttcacccgttgatggt 121
||||||||||||||||||||||||||||||| ||||
Sbjct: 58 agatcagatcatgtggcagtttcacccgttgttggt 93
>RF00640;MIR167_1;ABIM01011014.1/4156-4251 3649:Carica papaya
(papaya)
Length = 96
Score = 61.9 bits (31), Expect = 2e-09
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 15 catctgatgaagctgccagcatgatcttaacttctctct 53
|||| |||||||||||||||||||||||||| |||||||
Sbjct: 7 catcagatgaagctgccagcatgatcttaacctctctct 45
Score = 60.0 bits (30), Expect = 8e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 84 gaagatcagatcatgtggcagtttcacccgttga 117
|||||||||||||| |||||||||||||||||||
Sbjct: 59 gaagatcagatcatatggcagtttcacccgttga 92
>RF00640;MIR167_1;AC189327.2/282-159 51351:Brassica rapa subsp.
pekinensis
Length = 124
Score = 58.0 bits (29), Expect = 3e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 9 caccagcatctgatgaagctgccagcatgatct 41
|||| ||||||||||||||||||||||||||||
Sbjct: 1 caccggcatctgatgaagctgccagcatgatct 33
>RF00640;MIR167_1;EU548950.1/213-338 3702:Arabidopsis thaliana
(thale cress)
Length = 126
Score = 58.0 bits (29), Expect = 3e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 9 caccagcatctgatgaagctgccagcatgatct 41
|||| ||||||||||||||||||||||||||||
Sbjct: 1 caccggcatctgatgaagctgccagcatgatct 33
>RF00640;MIR167_1;CAAP02000793.1/41456-41548 29760:Vitis vinifera
Length = 93
Score = 56.0 bits (28), Expect = 1e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 86 agatcagatcatgtggcagtttcacccgttgatggt 121
|||||||||||||||||||||||||| |||| ||||
Sbjct: 58 agatcagatcatgtggcagtttcacctgttgttggt 93
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 22 tgaagctgccagcatgatcttaactt 47
|||||||||||||||||||| |||||
Sbjct: 14 tgaagctgccagcatgatctaaactt 39
>RF00640;MIR167_1;AASG02001065.1/6152-6064 3988:Ricinus communis
(castor bean)
Length = 89
Score = 54.0 bits (27), Expect = 5e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 91 agatcatgtggcagtttcacccgttgatggt 121
||||||||||||||||||||| |||||||||
Sbjct: 59 agatcatgtggcagtttcacctgttgatggt 89
>RF00640;MIR167_1;BABK01022869.1/1081-990 34305:Lotus japonicus
Length = 92
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 22 tgaagctgccagcatgatcttaacttc 48
|||||||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatcttaacttc 40
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 85 aagatcagatcatgtggcagtttcacc 111
|||||||||||||||||||||||||||
Sbjct: 56 aagatcagatcatgtggcagtttcacc 82
>RF00640;MIR167_1;CAAP02001791.1/44208-44309 29760:Vitis vinifera
Length = 102
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 91 agatcatgtggcagtttcacccgttgatgg 120
||||||||||||||||||||| ||||||||
Sbjct: 72 agatcatgtggcagtttcacctgttgatgg 101
>RF00640;MIR167_1;AC225328.1/13792-13888 4081:Solanum lycopersicum
Length = 97
Score = 50.1 bits (25), Expect = 7e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 85 aagatcagatcatgtggcagtttcacccgttgatggt 121
|||||||||||||||||||| ||||| |||||||||
Sbjct: 61 aagatcagatcatgtggcagcatcacctgttgatggt 97
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 22 tgaagctgccagcatgatcttaactt 47
|||||||||||||||||||| |||||
Sbjct: 14 tgaagctgccagcatgatctaaactt 39
>RF00640;MIR167_1;AARH01004314.1/38692-38599 3694:Populus
trichocarpa
Length = 94
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 90 cagatcatgtggcagtttcacccgttgatggt 121
|||||||||||||||||||||| |||| ||||
Sbjct: 63 cagatcatgtggcagtttcacctgttgttggt 94
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 tgaagctgccagcatgatctta 43
||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctta 35
>RF00640;MIR167_1;EU532400.1/147-239 3634:Gossypium barbadense
(sea-island cotton)
Length = 93
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 22 tgaagctgccagcatgatcttaacttc 48
|||||||||||||||||||| ||||||
Sbjct: 14 tgaagctgccagcatgatctaaacttc 40
>RF00640;MIR167_1;CAAP02000379.1/24621-24714 29760:Vitis vinifera
Length = 94
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 22 tgaagctgccagcatgatcttaacttc 48
|||||||||||||||||||| ||||||
Sbjct: 14 tgaagctgccagcatgatctcaacttc 40
>RF00640;MIR167_1;ABIM01012099.1/6617-6710 3649:Carica papaya
(papaya)
Length = 94
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 22 tgaagctgccagcatgatcttaactt 47
|||||||||||||||||||| |||||
Sbjct: 14 tgaagctgccagcatgatctaaactt 39
>RF00640;MIR167_1;AARH01008931.1/3492-3395 3694:Populus
trichocarpa
Length = 98
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 22 tgaagctgccagcatgatcttaactt 47
|||||||||||||||||||| |||||
Sbjct: 14 tgaagctgccagcatgatctgaactt 39
>RF00640;MIR167_1;AC209507.1/126147-126250 4081:Solanum
lycopersicum
Length = 104
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 22 tgaagctgccagcatgatcttaactt 47
|||||||||||||||||||| |||||
Sbjct: 14 tgaagctgccagcatgatctaaactt 39
>RF00640;MIR167_1;AC225328.1/5014-5119 4081:Solanum lycopersicum
Length = 106
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 22 tgaagctgccagcatgatcttaactt 47
|||||||||||||||||||| |||||
Sbjct: 14 tgaagctgccagcatgatctaaactt 39
>RF00640;MIR167_1;ABXC01000326.1/41757-41921 4558:Sorghum bicolor
(sorghum)
Length = 165
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 20 gatgaagctgccagcatgatct 41
||||||||||||||||||||||
Sbjct: 12 gatgaagctgccagcatgatct 33
>RF00640;MIR167_1;ABXC01000720.1/131669-131557 4558:Sorghum
bicolor (sorghum)
Length = 113
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 20 gatgaagctgccagcatgatct 41
||||||||||||||||||||||
Sbjct: 12 gatgaagctgccagcatgatct 33
>RF00640;MIR167_1;AY551235.1/11-128 4530:Oryza sativa (rice)
Length = 118
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 20 gatgaagctgccagcatgatct 41
||||||||||||||||||||||
Sbjct: 12 gatgaagctgccagcatgatct 33
