miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00639;mir-515;AANU01181654.1/5782-5868 9544:Macaca mulatta
(rhesus monkey)
Length = 87
Score = 115 bits (58), Expect = 1e-25
Identities = 82/89 (92%), Gaps = 2/89 (2%)
Strand = Plus / Plus
Query: 1 tctcatgatgtgaccctctagagcgaagcgctttctgttggctagaaaagaataggaagc 60
||||||||||||||||||||||| |||||||| |||||||||| |||| |||||||||
Sbjct: 1 tctcatgatgtgaccctctagaggaaagcgcttactgttggctaaaaaa--ataggaagc 58
Query: 61 gcttccctttagagtgttacgctttgaga 89
||||| |||||||||||||||||||||||
Sbjct: 59 gcttctctttagagtgttacgctttgaga 87
>RF00639;mir-515;EU086470.1/90144-90230 61621:Rhinopithecus bieti
(Black snub-nosed monkey)
Length = 87
Score = 97.6 bits (49), Expect = 2e-20
Identities = 79/88 (89%), Gaps = 2/88 (2%)
Strand = Plus / Plus
Query: 1 tctcatgatgtgaccctctagagcgaagcgctttctgttggctagaaaagaataggaagc 60
||||||| ||||||||||||||| ||||||||||||||||||| |||||| || ||||
Sbjct: 1 tctcatgctgtgaccctctagagggaagcgctttctgttggct--caaagaaaagaaagc 58
Query: 61 gcttccctttagagtgttacgctttgag 88
||||||||| |||||||||||| |||||
Sbjct: 59 gcttcccttcagagtgttacgccttgag 86
>RF00639;mir-515;EU086471.1/106139-106225 9590:Symphalangus
syndactylus (siamang)
Length = 87
Score = 91.7 bits (46), Expect = 1e-18
Identities = 79/89 (88%), Gaps = 2/89 (2%)
Strand = Plus / Plus
Query: 1 tctcatgatgtgaccctctagagcgaagcgctttctgttggctagaaaagaataggaagc 60
|||||||||||||| |||||||| || |||||||||||||||| | |||| |||||| |
Sbjct: 1 tctcatgatgtgactctctagagggatgcgctttctgttggct--ataagagtaggaacc 58
Query: 61 gcttccctttagagtgttacgctttgaga 89
|| ||||||||||| ||||||||||||||
Sbjct: 59 gcatccctttagagcgttacgctttgaga 87
>RF00639;mir-515;ABSL01077580.1/3649-3562 9606:Homo sapiens
(human)
Length = 88
Score = 69.9 bits (35), Expect = 5e-12
Identities = 60/66 (90%), Gaps = 3/66 (4%)
Strand = Plus / Plus
Query: 25 gaagcgctttctgttggctagaaaagaataggaagcgcttccctttagagtgtt-acgct 83
|||||||||||||||||||| |||||| || ||||||||||||| |||||||| |||||
Sbjct: 25 gaagcgctttctgttggcta--aaagaaaagaaagcgcttcccttcagagtgttaacgct 82
Query: 84 ttgaga 89
||||||
Sbjct: 83 ttgaga 88
>RF00639;mir-515;EU086470.1/64981-65067 61621:Rhinopithecus bieti
(Black snub-nosed monkey)
Length = 87
Score = 61.9 bits (31), Expect = 1e-09
Identities = 73/86 (84%), Gaps = 2/86 (2%)
Strand = Plus / Plus
Query: 1 tctcatgatgtgaccctctagagcgaagcgctttctgttggctagaaaagaataggaagc 60
||||||| ||||||||||||||| |||| ||||||||||| || |||||| || | ||
Sbjct: 1 tctcatgctgtgaccctctagagggaagtgctttctgttgcct--gaaagaaaagaacgc 58
Query: 61 gcttccctttagagtgttacgctttg 86
|||||||| ||||| ||||| |||||
Sbjct: 59 gcttccctatagagggttaccctttg 84
>RF00639;mir-515;AANU01181659.1/6633-6719 9544:Macaca mulatta
(rhesus monkey)
Length = 87
Score = 60.0 bits (30), Expect = 5e-09
Identities = 69/81 (85%), Gaps = 2/81 (2%)
Strand = Plus / Plus
Query: 9 tgtgaccctctagagcgaagcgctttctgttggctagaaaagaataggaagcgcttccct 68
||||||||||||||| ||||| |||||||||| || | ||||| || | ||||||||||
Sbjct: 9 tgtgaccctctagagggaagcactttctgttgtctgg--aagaaaagaatgcgcttccct 66
Query: 69 ttagagtgttacgctttgaga 89
|||||| ||||| || |||||
Sbjct: 67 ttagagggttactctctgaga 87
>RF00639;mir-515;AANU01181658.1/2015-2101 9544:Macaca mulatta
(rhesus monkey)
Length = 87
Score = 56.0 bits (28), Expect = 8e-08
Identities = 73/87 (83%), Gaps = 2/87 (2%)
Strand = Plus / Plus
Query: 3 tcatgatgtgaccctctagagcgaagcgctttctgttggctagaaaagaataggaagcgc 62
||||| |||||| |||| ||| |||||||||||||||| || |||||| | ||||||
Sbjct: 3 tcatgctgtgactctctggagggaagcgctttctgttgtct--gaaagaaaacaaagcgc 60
Query: 63 ttccctttagagtgttacgctttgaga 89
||| |||||||| |||||| |||||||
Sbjct: 61 ttctctttagagagttacggtttgaga 87
>RF00639;mir-515;CABD01442931.2/227-141 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 87
Score = 54.0 bits (27), Expect = 3e-07
Identities = 72/86 (83%), Gaps = 2/86 (2%)
Strand = Plus / Plus
Query: 4 catgatgtgaccctctagagcgaagcgctttctgttggctagaaaagaataggaagcgct 63
|||| ||||||||||||||| ||||| |||||||||| || |||||| |||||||
Sbjct: 4 catgctgtgaccctctagagggaagcactttctgttgtct--gaaagaaaccaaagcgct 61
Query: 64 tccctttagagtgttacgctttgaga 89
||||||| ||| |||||| |||||||
Sbjct: 62 tccctttggagcgttacggtttgaga 87
>RF00639;mir-515;AANU01181649.1/4179-4265 9544:Macaca mulatta
(rhesus monkey)
Length = 87
Score = 54.0 bits (27), Expect = 3e-07
Identities = 72/86 (83%), Gaps = 2/86 (2%)
Strand = Plus / Plus
Query: 4 catgatgtgaccctctagagcgaagcgctttctgttggctagaaaagaataggaagcgct 63
|||| ||||||||||| ||| |||||||||||||||| || |||||| || | | ||
Sbjct: 4 catgctgtgaccctctggagggaagcgctttctgttgtct--gaaagaaaagaacgtgca 61
Query: 64 tccctttagagtgttacgctttgaga 89
||||||||||| ||||| ||||||||
Sbjct: 62 tccctttagagggttactctttgaga 87
>RF00665;mir-290;AANU01181659.1/9779-9861 9544:Macaca mulatta
(rhesus monkey)
Length = 83
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 9 tgtgaccctctagagcgaagcgctttctgt 38
||||||||||||||| ||||||||||||||
Sbjct: 7 tgtgaccctctagagggaagcgctttctgt 36
>RF00639;mir-515;EU086472.1/170763-170850 9509:Ateles geoffroyi
(black-handed spider monkey)
Length = 88
Score = 50.1 bits (25), Expect = 5e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 1 tctcatgatgtgaccctctagagcgaagcgctttctg 37
||||||| ||||||||||||||| |||| ||||||||
Sbjct: 1 tctcatgctgtgaccctctagagggaagtgctttctg 37
>RF00639;mir-515;EU086472.1/102140-102226 9509:Ateles geoffroyi
(black-handed spider monkey)
Length = 87
Score = 50.1 bits (25), Expect = 5e-06
Identities = 69/81 (85%), Gaps = 2/81 (2%)
Strand = Plus / Plus
Query: 9 tgtgaccctctagagcgaagcgctttctgttggctagaaaagaataggaagcgcttccct 68
|||||||||||| || |||| ||||||||||| || |||||||| || || |||||||
Sbjct: 9 tgtgaccctctaaagggaagtgctttctgttgtct-gaaaagaaagagacgc-cttccct 66
Query: 69 ttagagtgttacgctttgaga 89
|||||||||||| |||||||
Sbjct: 67 ttagagtgttaccgtttgaga 87
>RF00639;mir-515;EU086472.1/40574-40660 9509:Ateles geoffroyi
(black-handed spider monkey)
Length = 87
Score = 48.1 bits (24), Expect = 2e-05
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 46 aaaagaataggaagcgcttccctttagagtgttacgctttgaga 89
||||||| || ||| ||||||||||||||||| ||| |||||||
Sbjct: 44 aaaagaaaagaaagtgcttccctttagagtgtgacggtttgaga 87
>RF00639;mir-515;EU086472.1/66929-67015 9509:Ateles geoffroyi
(black-handed spider monkey)
Length = 87
Score = 48.1 bits (24), Expect = 2e-05
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 1 tctcatgatgtgaccctctagagcgaagcgctttctgttg 40
||||||| |||||||| ||| || ||||||||||||||||
Sbjct: 1 tctcatgctgtgacccactaaagggaagcgctttctgttg 40
>RF00665;mir-290;EU086470.1/115499-115578 61621:Rhinopithecus
bieti (Black snub-nosed monkey)
Length = 80
Score = 46.1 bits (23), Expect = 7e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 9 tgtgaccctctagagcgaagcgctttctgtt 39
|||||| |||||||| |||||||||||||||
Sbjct: 7 tgtgacactctagagggaagcgctttctgtt 37
>RF00639;mir-515;EU086472.1/50251-50337 9509:Ateles geoffroyi
(black-handed spider monkey)
Length = 87
Score = 46.1 bits (23), Expect = 7e-05
Identities = 71/86 (82%), Gaps = 2/86 (2%)
Strand = Plus / Plus
Query: 4 catgatgtgaccctctagagcgaagcgctttctgttggctagaaaagaataggaagcgct 63
|||| |||||||||| | || |||||||||||||||| || |||||| || | |||||
Sbjct: 4 catgctgtgaccctccaaagggaagcgctttctgttgtct--gaaagaaaagaaggcgct 61
Query: 64 tccctttagagtgttacgctttgaga 89
|||||||||| ||||| |||||||
Sbjct: 62 cccctttagaggtttacggtttgaga 87
>RF00639;mir-515;EU086470.1/54844-54930 61621:Rhinopithecus bieti
(Black snub-nosed monkey)
Length = 87
Score = 46.1 bits (23), Expect = 7e-05
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 47 aaagaataggaagcgcttccctttagagtgttacgctttgaga 89
|||||| || |||||||||||||| ||| |||||| |||||||
Sbjct: 45 aaagaagagaaagcgcttcccttttgagggttacggtttgaga 87
>RF00639;mir-515;EU086470.1/115497-115580 61621:Rhinopithecus
bieti (Black snub-nosed monkey)
Length = 84
Score = 46.1 bits (23), Expect = 7e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 9 tgtgaccctctagagcgaagcgctttctgtt 39
|||||| |||||||| |||||||||||||||
Sbjct: 9 tgtgacactctagagggaagcgctttctgtt 39
>RF00665;mir-290;EU086474.1/194-112 9470:Nycticebus coucang (slow
loris)
Length = 83
Score = 44.1 bits (22), Expect = 3e-04
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 3 tcatgatgtgaccctctagagcgaagcgctttctgttg 40
||||| |||||||||||| || ||||| ||||||||||
Sbjct: 83 tcatgctgtgaccctctaaagggaagcactttctgttg 46
>RF00665;mir-290;CABD01093351.1/5763-5845 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 83
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 9 tgtgaccctctagagcgaagcgctttctgt 38
|||||||||||| || ||||||||||||||
Sbjct: 7 tgtgaccctctaaagggaagcgctttctgt 36
>RF00639;mir-515;EU086472.1/58206-58292 9509:Ateles geoffroyi
(black-handed spider monkey)
Length = 87
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 60 cgcttccctttagagtgttacgctttgaga 89
||||||||||||||||||||| |||||||
Sbjct: 58 cgcttccctttagagtgttaccgtttgaga 87
>RF00639;mir-515;EU086472.1/116044-116131 9509:Ateles geoffroyi
(black-handed spider monkey)
Length = 88
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 1 tctcatgatgtgaccctctagagcgaagcg 30
||||||| ||||||||||||||| ||||||
Sbjct: 1 tctcatgctgtgaccctctagagggaagcg 30
>RF00639;mir-515;AANU01181659.1/3404-3490 9544:Macaca mulatta
(rhesus monkey)
Length = 87
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 13 accctctagagcgaagcgctttctgt 38
||||||||||| ||||||||||||||
Sbjct: 13 accctctagagggaagcgctttctgt 38
>RF00639;mir-515;AANU01181649.1/7445-7531 9544:Macaca mulatta
(rhesus monkey)
Length = 87
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 9 tgtgaccctctagagcgaagcgctttctgt 38
||||||||||||||| |||||| |||||||
Sbjct: 9 tgtgaccctctagagggaagcgatttctgt 38
