miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01897;mir-188;ABRO01329850.1/1587-1692 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 106
Score = 133 bits (67), Expect = 4e-31
Identities = 73/75 (97%)
Strand = Plus / Plus
Query: 4 cttgctttctctcctccatgccttgagtgtaggaccgttggcatcttaattaccctccca 63
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 10 cttgctttctctccttcatgccttgagtgtaggaccgttagcatcttaattaccctccca 69
Query: 64 cacccaaggcttgca 78
|||||||||||||||
Sbjct: 70 cacccaaggcttgca 84
>RF01897;mir-188;AAEX02025396.1/219014-218909 9615:Canis lupus
familiaris (dog)
Length = 106
Score = 129 bits (65), Expect = 5e-30
Identities = 74/77 (96%)
Strand = Plus / Plus
Query: 2 gacttgctttctctcctccatgccttgagtgtaggaccgttggcatcttaattaccctcc 61
||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 8 gacttgctttctctcttacatgccttgagtgtaggaccgttggtatcttaattaccctcc 67
Query: 62 cacacccaaggcttgca 78
|||||||||||||||||
Sbjct: 68 cacacccaaggcttgca 84
>RF01897;mir-188;AAGW01126437.1/520-625 9986:Oryctolagus cuniculus
(rabbit)
Length = 106
Score = 127 bits (64), Expect = 2e-29
Identities = 73/76 (96%)
Strand = Plus / Plus
Query: 3 acttgctttctctcctccatgccttgagtgtaggaccgttggcatcttaattaccctccc 62
|||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 9 acttgctttctctcttccatgccttgagtgtaggactgttggaatcttaattaccctccc 68
Query: 63 acacccaaggcttgca 78
||||||||||||||||
Sbjct: 69 acacccaaggcttgca 84
>RF01897;mir-188;AAHY01206841.1/3828-3933 10090:Mus musculus
(house mouse)
Length = 106
Score = 123 bits (62), Expect = 3e-28
Identities = 71/74 (95%)
Strand = Plus / Plus
Query: 5 ttgctttctctcctccatgccttgagtgtaggaccgttggcatcttaattaccctcccac 64
||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 11 ttgctttttctcttccatgccttgagtgtaggaccgttgacatcttaattaccctcccac 70
Query: 65 acccaaggcttgca 78
||||||||||||||
Sbjct: 71 acccaaggcttgca 84
>RF01897;mir-188;AANN01828942.1/2423-2529 9365:Erinaceus europaeus
(western European hedgehog)
Length = 107
Score = 103 bits (52), Expect = 3e-22
Identities = 70/76 (92%)
Strand = Plus / Plus
Query: 3 acttgctttctctcctccatgccttgagtgtaggaccgttggcatcttaattaccctccc 62
||||||||| |||| | |||||||||||||||||||||||||||||| ||||||||||
Sbjct: 9 acttgctttgtctcttgcatgccttgagtgtaggaccgttggcatctctgttaccctccc 68
Query: 63 acacccaaggcttgca 78
||||||||||||||||
Sbjct: 69 acacccaaggcttgca 84
>RF01897;mir-188;AAGU02358860.1/2697-2802 9785:Loxodonta africana
(African savanna elephant)
Length = 106
Score = 97.6 bits (49), Expect = 2e-20
Identities = 70/77 (90%)
Strand = Plus / Plus
Query: 2 gacttgctttctctcctccatgccttgagtgtaggaccgttggcatcttaattaccctcc 61
|||||| ||| |||| | ||||||||||||||||||||||||| || ||||||| |||||
Sbjct: 8 gacttgttttttctcttacatgccttgagtgtaggaccgttggtatattaattatcctcc 67
Query: 62 cacacccaaggcttgca 78
|||||||||||||||||
Sbjct: 68 cacacccaaggcttgca 84
>RF01897;mir-188;ABRQ01388379.1/2083-2188 9813:Procavia capensis
(cape rock hyrax)
Length = 106
Score = 67.9 bits (34), Expect = 2e-11
Identities = 64/74 (86%)
Strand = Plus / Plus
Query: 5 ttgctttctctcctccatgccttgagtgtaggaccgttggcatcttaattaccctcccac 64
||||||| |||| | |||||||||||||||||| ||| |||| ||| ||| ||||||||
Sbjct: 11 ttgctttttctcttacatgccttgagtgtaggaatgttagcatattagttatcctcccac 70
Query: 65 acccaaggcttgca 78
|||||||| |||||
Sbjct: 71 acccaaggtttgca 84
