miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00641;mir-154;ABRQ01054369.1/755-834 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 127 bits (64), Expect = 2e-29
Identities = 76/80 (95%)
Strand = Plus / Plus
Query: 1 ggtacttaatgagaagttgcccgtgtctttttcgctttatttgtgacgaaacattcgcgg 60
|||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||
Sbjct: 1 ggtacttaatgagaagttgcccgtgtttttttcgctgaatctgtgacgaaacattcgcgg 60
Query: 61 tgcacttctttttcagtatc 80
||||||||||||||||||||
Sbjct: 61 tgcacttctttttcagtatc 80
>RF00641;mir-154;AAYZ01424897.1/234-313 9978:Ochotona princeps
(American pika)
Length = 80
Score = 113 bits (57), Expect = 3e-25
Identities = 72/77 (93%)
Strand = Plus / Plus
Query: 1 ggtacttaatgagaagttgcccgtgtctttttcgctttatttgtgacgaaacattcgcgg 60
||||||||| |||||| ||||||||||||||||||| |||||| ||||||||||||||||
Sbjct: 1 ggtacttaaggagaagctgcccgtgtctttttcgctgtatttgggacgaaacattcgcgg 60
Query: 61 tgcacttctttttcagt 77
|||||||||| ||||||
Sbjct: 61 tgcacttcttcttcagt 77
>RF00641;mir-154;AAIY01434920.1/105-183 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 79
Score = 61.9 bits (31), Expect = 1e-09
Identities = 55/63 (87%)
Strand = Plus / Plus
Query: 12 agaagttgcccgtgtctttttcgctttatttgtgacgaaacattcgcggtgcacttcttt 71
||||||||||| ||| |||||||||||| |||||||||||| | |||||||||||||
Sbjct: 11 agaagttgcccatgttattttcgctttatatgtgacgaaacaaacatggtgcacttcttt 70
Query: 72 ttc 74
|||
Sbjct: 71 ttc 73
>RF00641;mir-154;AAPY01359973.1/4034-4113 37347:Tupaia belangeri
(northern tree shrew)
Length = 80
Score = 56.0 bits (28), Expect = 7e-08
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 13 gaagttgcccgtgtctttttcgctttatttgtgacgaaacattcgcggtgcacttctttt 72
|||| ||||||||| |||||||||||| |||||||||||| | ||||||||||||||
Sbjct: 13 gaagctgcccgtgttattttcgctttatgtgtgacgaaacaaacatggtgcacttctttt 72
>RF00641;mir-154;AANN01422716.1/1878-1955 9365:Erinaceus europaeus
(western European hedgehog)
Length = 78
Score = 50.1 bits (25), Expect = 4e-06
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 13 gaagttgcccgtgtctttttcgctttatttgtgacgaaacattcgcggtgcac 65
||||| |||||||||||||||||| | | |||| |||||||||| |||||||
Sbjct: 13 gaagtcgcccgtgtctttttcgctgtgctggtgatgaaacattcgtggtgcac 65
>RF00641;mir-154;ABRQ01054369.1/2520-2599 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 50.1 bits (25), Expect = 4e-06
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 13 gaagttgcccgtgtctttttcgctttatttgtgacgaaacattcgcggtgcacttctttt 72
|||||||||| ||| |||||||||||| ||||||||||| | ||||||||||||||
Sbjct: 13 gaagttgcccatgttcttttcgctttatacgtgacgaaacaaacatggtgcacttctttt 72
Query: 73 t 73
|
Sbjct: 73 t 73
>RF00641;mir-154;ABRQ01054377.1/1437-1516 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 48.1 bits (24), Expect = 2e-05
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 31 ttcgctttatttgtgacgaaacattcgcggtgcacttctttttcagta 78
|||||||||||||||||||| ||| | |||| ||| | ||||||||||
Sbjct: 31 ttcgctttatttgtgacgaatcatacacggttcacctatttttcagta 78
>RF00641;mir-154;AAEX02019639.1/142350-142427 9615:Canis lupus
familiaris (dog)
Length = 78
Score = 44.1 bits (22), Expect = 3e-04
Identities = 44/50 (88%), Gaps = 1/50 (2%)
Strand = Plus / Plus
Query: 31 ttcgctttatttgtgacgaaacattcgcggtgcacttctttttcagtatc 80
|||||||||||| |||||||| || || ||||||||||| ||| ||||||
Sbjct: 30 ttcgctttatttatgacgaaaaatacg-ggtgcacttctgtttgagtatc 78
