miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AF277239.1/1056-1190 37679:Heteranthelium piliferum
Length = 135
Score = 65.9 bits (33), Expect = 1e-10
Identities = 51/57 (89%)
Strand = Plus / Minus
Query: 83 ctagatacatccttatttagacaaatctttgacaactattttgagacggaaggagta 139
|||||||||||| ||||||||||||||| |||||| |||||| |||||| ||||||
Sbjct: 61 ctagatacatccgtatttagacaaatctatgacaagaattttgggacggagggagta 5
>RF00906;MIR1122;AY821733.1/621-487 4568:Triticum monococcum
Length = 135
Score = 52.0 bits (26), Expect = 2e-06
Identities = 47/54 (87%)
Strand = Plus / Minus
Query: 86 gatacatccttatttagacaaatctttgacaactattttgagacggaaggagta 139
||||||||| ||||||||||||||| ||||| |||||| |||||| ||||||
Sbjct: 58 gatacatccgtatttagacaaatctaagacaagaattttgggacggagggagta 5
>RF00906;MIR1122;AY485644.1/84291-84425 4568:Triticum monococcum
Length = 135
Score = 50.1 bits (25), Expect = 9e-06
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 87 atacatccttatttagacaaatctttgacaactattttgagacggaaggagta 139
|||||||| ||||||||||||| | |||||| |||||| |||||| ||||||
Sbjct: 57 atacatccatatttagacaaatttaagacaacaattttgggacggagggagta 5
>RF00906;MIR1122;FJ374610.1/683-817 4568:Triticum monococcum
Length = 135
Score = 48.1 bits (24), Expect = 3e-05
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 84 tagatacatccttatttagacaaatctttgacaactattttgagacggaaggagta 139
||||||||||| ||| ||||||||||| ||||| |||||| |||||| ||||||
Sbjct: 76 tagatacatccatatctagacaaatctaagacaagaattttgggacggagggagta 131
>RF00906;MIR1122;EU660895.1/53244-53110 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 44.1 bits (22), Expect = 5e-04
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 87 atacatccttatttagacaaatctttgacaactattttgagacggaaggagtag 140
|||||||| ||||||||||||||| ||||| |||||| || ||| |||||||
Sbjct: 79 atacatccgtatttagacaaatctaagacaagaattttgggatggagggagtag 132
>RF00906;MIR1122;EF540321.1/52965-52831 4571:Triticum turgidum
Length = 135
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 83 ctagatacatccttatttagacaaat 108
|||||||||||| |||||||||||||
Sbjct: 75 ctagatacatccgtatttagacaaat 100
