miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00892;mir-551;AADC01000147.1/1258-1173 9606:Homo sapiens
(human)
Length = 86
Score = 155 bits (78), Expect = 1e-37
Identities = 84/86 (97%)
Strand = Plus / Plus
Query: 8 gccgggtgaccctggaaatccagagtgggtggggcctgtctgaccatttctaggcgaccc 67
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct: 1 gccgggtgaccctggaaatccagagtgggtggggccagtctgaccgtttctaggcgaccc 60
Query: 68 actcttggtttccagggttgccctgg 93
||||||||||||||||||||||||||
Sbjct: 61 actcttggtttccagggttgccctgg 86
>RF00892;mir-551;AAGU02438627.1/1313-1227 9785:Loxodonta africana
(African savanna elephant)
Length = 87
Score = 133 bits (67), Expect = 5e-31
Identities = 79/83 (95%)
Strand = Plus / Plus
Query: 12 ggtgaccctggaaatccagagtgggtggggcctgtctgaccatttctaggcgacccactc 71
||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||
Sbjct: 5 ggtgaccctggaaatccagagtgggtgaggcctgtctgaccctttctaggcgacccattc 64
Query: 72 ttggtttccagggttgccctgga 94
|||||||| ||||||||||||||
Sbjct: 65 ttggtttcgagggttgccctgga 87
>RF00892;mir-551;AAGV020839576.1/977-1062 9361:Dasypus
novemcinctus (nine-banded armadillo)
Length = 86
Score = 117 bits (59), Expect = 3e-26
Identities = 71/75 (94%)
Strand = Plus / Plus
Query: 19 ctggaaatccagagtgggtggggcctgtctgaccatttctaggcgacccactcttggttt 78
|||||||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||
Sbjct: 12 ctggaaatccagagtgggtgaggcctgtctgaccctttctaggcgacccattcttggttt 71
Query: 79 ccagggttgccctgg 93
| |||||||||||||
Sbjct: 72 caagggttgccctgg 86
>RF00892;mir-551;AAQR01640449.1/259-174 30611:Otolemur garnettii
(small-eared galago)
Length = 86
Score = 105 bits (53), Expect = 1e-22
Identities = 74/81 (91%)
Strand = Plus / Plus
Query: 12 ggtgaccctggaaatccagagtgggtggggcctgtctgaccatttctaggcgacccactc 71
||||||||||||||||||||||||||| |||||||||| || |||| |||||||||||||
Sbjct: 5 ggtgaccctggaaatccagagtgggtgaggcctgtctggccgtttccaggcgacccactc 64
Query: 72 ttggtttccagggttgccctg 92
|||||||||| ||||||||
Sbjct: 65 atggtttccagctttgccctg 85
>RF00892;mir-551;AAFR03065316.1/1308-1223 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 86
Score = 79.8 bits (40), Expect = 6e-15
Identities = 67/76 (88%)
Strand = Plus / Plus
Query: 14 tgaccctggaaatccagagtgggtggggcctgtctgaccatttctaggcgacccactctt 73
|||||||||||||||||| |||||| |||||| ||| ||||||||||||||| ||||
Sbjct: 7 tgaccctggaaatccagaaggggtggagcctgttggacagtttctaggcgacccattctt 66
Query: 74 ggtttccagggttgcc 89
|||||| |||||||||
Sbjct: 67 ggtttcaagggttgcc 82
>RF00892;mir-551;AAFC03055164.1/49690-49606 9913:Bos taurus
(cattle)
Length = 85
Score = 71.9 bits (36), Expect = 1e-12
Identities = 63/72 (87%)
Strand = Plus / Plus
Query: 22 gaaatccagagtgggtggggcctgtctgaccatttctaggcgacccactcttggtttcca 81
|||| |||||| |||| |||||||||||| ||||| ||||||||| ||||||||||||
Sbjct: 14 gaaacccagagcaggtgaggcctgtctgactgtttctgggcgacccaatcttggtttcca 73
Query: 82 gggttgccctgg 93
|||||||||||
Sbjct: 74 tggttgccctgg 85
>RF00892;mir-551;AAIY01075253.1/949-865 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 85
Score = 46.1 bits (23), Expect = 8e-05
Identities = 66/79 (83%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 11 gggtgaccctggaaatccagagtgggtggggcctgtctgaccatttctaggcgacccact 70
||||||| |||| |||||||||||||| | ||||||| | | | ||||| |||| || |
Sbjct: 4 gggtgacactggcaatccagagtgggt-gagcctgtccaagcctctctagacgacgcatt 62
Query: 71 cttggtttccagggttgcc 89
||||||||| |||||||||
Sbjct: 63 cttggtttcaagggttgcc 81
