miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00892;mir-551;ABRQ01321591.1/2376-2461 9813:Procavia capensis
(cape rock hyrax)
Length = 86
Score = 151 bits (76), Expect = 2e-36
Identities = 79/80 (98%)
Strand = Plus / Plus
Query: 14 tggcccatgaaatcaagcgtgggtgagacctggtgcagaacaggaaggcgacccatactt 73
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 7 tggcccatgaaatcaagcgtgggtgagacctggtgcaaaacaggaaggcgacccatactt 66
Query: 74 ggtttcagaggctgcgagaa 93
||||||||||||||||||||
Sbjct: 67 ggtttcagaggctgcgagaa 86
>RF00892;mir-551;AAQR01614836.1/887-972 30611:Otolemur garnettii
(small-eared galago)
Length = 86
Score = 125 bits (63), Expect = 1e-28
Identities = 75/79 (94%)
Strand = Plus / Plus
Query: 15 ggcccatgaaatcaagcgtgggtgagacctggtgcagaacaggaaggcgacccatacttg 74
||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 8 ggcccgtgaaatcaagcgtgggtgagacctggtgcagaacaggaaggcgacccacacttg 67
Query: 75 gtttcagaggctgcgagaa 93
||||||| ||||| |||||
Sbjct: 68 gtttcaggggctgtgagaa 86
>RF00892;mir-551;AANN01687869.1/1924-1838 9365:Erinaceus europaeus
(western European hedgehog)
Length = 87
Score = 119 bits (60), Expect = 7e-27
Identities = 76/80 (95%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 8 ctctcctggcccatgaaatcaagcgtgggtgagacctggtgcagaac-aggaaggcgacc 66
|||||||||||||||||||||||| ||||||||||||||| |||||| || |||||||||
Sbjct: 1 ctctcctggcccatgaaatcaagcctgggtgagacctggtacagaacaagaaaggcgacc 60
Query: 67 catacttggtttcagaggct 86
||||||||||||||||||||
Sbjct: 61 catacttggtttcagaggct 80
>RF00892;mir-551;AAKN02050963.1/24909-24994 10141:Cavia porcellus
(domestic guinea pig)
Length = 86
Score = 119 bits (60), Expect = 7e-27
Identities = 75/80 (93%)
Strand = Plus / Plus
Query: 14 tggcccatgaaatcaagcgtgggtgagacctggtgcagaacaggaaggcgacccatactt 73
||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 7 tggcccaggaaatcaagcgtgggtgagacctggtgcggaaggggaaggcgacccatactt 66
Query: 74 ggtttcagaggctgcgagaa 93
||||||||||||||| ||||
Sbjct: 67 ggtttcagaggctgcaagaa 86
>RF00892;mir-551;AAWZ01032406.1/96128-96215 28377:Anolis
carolinensis (green anole)
Length = 88
Score = 58.0 bits (29), Expect = 2e-08
Identities = 54/61 (88%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 22 gaaatcaagcgtgggtgagacctggtgcaga-acaggaaggcgacccatacttggtttca 80
||||||||| |||||||||||| ||| | | || |||||||||||||||||||||||||
Sbjct: 16 gaaatcaaggttgggtgagacctcgtgaacagactggaaggcgacccatacttggtttca 75
Query: 81 g 81
|
Sbjct: 76 g 76
>RF00892;mir-551;AAFR03046841.1/43899-43813 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 87
Score = 56.0 bits (28), Expect = 8e-08
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 58 aaggcgacccatacttggtttcagaggctgcgagaa 93
|||||||||||||||||||||||| |||| ||||||
Sbjct: 52 aaggcgacccatacttggtttcaggggcttcgagaa 87
>RF00892;mir-551;AADN02021036.1/52994-52908 9031:Gallus gallus
(chicken)
Length = 87
Score = 54.0 bits (27), Expect = 3e-07
Identities = 58/67 (86%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 22 gaaatcaagcgtgggtgagacctggt-gcagaacaggaaggcgacccatacttggtttca 80
||||||||| |||||| |||||| || | | ||| || ||||||||||||||||||||||
Sbjct: 15 gaaatcaagggtgggtaagaccttgtaggataactggcaggcgacccatacttggtttca 74
Query: 81 gaggctg 87
| |||||
Sbjct: 75 ggggctg 81
>RF00892;mir-551;ABQF01023095.1/42853-42939 59729:Taeniopygia
guttata
Length = 87
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 58 aaggcgacccatacttggtttcagaggctg 87
|||||||||||||||||||||||| |||||
Sbjct: 52 aaggcgacccatacttggtttcaggggctg 81
>RF00892;mir-551;AAVX01059360.1/184-266 7868:Callorhinchus milii
(ghost shark)
Length = 83
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 55 aggaaggcgacccatacttggtttc 79
|||||||||||||||||||||||||
Sbjct: 48 aggaaggcgacccatacttggtttc 72
