miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00998;mir-562;AANU01247092.1/5986-6080 9544:Macaca mulatta
(rhesus monkey)
Length = 95
Score = 188 bits (95), Expect = 9e-48
Identities = 95/95 (100%)
Strand = Plus / Plus
Query: 1 agtgaaattgctgggtcatatggtcagtctactttcagagtaattgtgaaagtatttttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agtgaaattgctgggtcatatggtcagtctactttcagagtaattgtgaaagtatttttc 60
Query: 61 aaagtagctgtaccatttgcattccctgtggcaat 95
|||||||||||||||||||||||||||||||||||
Sbjct: 61 aaagtagctgtaccatttgcattccctgtggcaat 95
>RF00998;mir-562;CABD01041488.1/1987-2088 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 102
Score = 58.0 bits (29), Expect = 2e-08
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 55 tttttcaaagtagctgtaccatttgcattccctgtggcaat 95
||||||||||| |||||||||||| ||||||| ||||||||
Sbjct: 62 tttttcaaagtggctgtaccatttacattcccagtggcaat 102
>RF00998;mir-562;AAWR02025481.1/131815-131713 9796:Equus caballus
(horse)
Length = 103
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 agtgaaattgctgggtcatatggt 24
||||||||||||||||||||||||
Sbjct: 1 agtgaaattgctgggtcatatggt 24
>RF00998;mir-562;ABRN01362808.1/2720-2617 9739:Tursiops truncatus
(bottlenosed dolphin)
Length = 104
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 agtgaaattgctgggtcatatggt 24
||||||||||||||||||||||||
Sbjct: 1 agtgaaattgctgggtcatatggt 24
>RF00998;mir-562;AACN010039118.1/1561-1662 9615:Canis lupus
familiaris (dog)
Length = 102
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 agtgaaattgctgggtcatatggt 24
||||||||||||||||||||||||
Sbjct: 1 agtgaaattgctgggtcatatggt 24
>RF00998;mir-562;AACN010304770.1/290-191 9615:Canis lupus
familiaris (dog)
Length = 100
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 agtgaaattgctgggtcatatggt 24
||||||||||||||||||||||||
Sbjct: 1 agtgaaattgctgggtcatatggt 24
>RF00998;mir-562;ABDC01235578.1/7831-7933 30608:Microcebus murinus
(gray mouse lemur)
Length = 103
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 agtgaaattgctgggtcatatggt 24
||||||||||||||||||||||||
Sbjct: 1 agtgaaattgctgggtcatatggt 24
>RF00998;mir-562;AANU01277556.1/11367-11464 9544:Macaca mulatta
(rhesus monkey)
Length = 98
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 55 tttttcaaagtagctgtaccatttgcattccc 86
||||||||||| |||||||||||| |||||||
Sbjct: 58 tttttcaaagtggctgtaccatttacattccc 89
>RF00998;mir-562;AAGU02578353.1/162-264 9785:Loxodonta africana
(African savanna elephant)
Length = 103
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 agtgaaattgctgggtcatatggt 24
||||||||||||||||||||||||
Sbjct: 1 agtgaaattgctgggtcatatggt 24
>RF00998;mir-562;ABVD01381474.1/806-704 9358:Choloepus hoffmanni
(Hoffmann's two-fingered sloth)
Length = 103
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 2 gtgaaattgctgggtcatatggt 24
|||||||||||||||||||||||
Sbjct: 2 gtgaaattgctgggtcatatggt 24
>RF00998;mir-562;AAWR02038665.1/29308-29410 9796:Equus caballus
(horse)
Length = 103
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 agtgaaattgctgggtcatatggtcagtcta 31
|||| ||||||||||||||||||| ||||||
Sbjct: 1 agtggaattgctgggtcatatggtaagtcta 31
>RF00998;mir-562;AAWR02041969.1/39878-39974 9796:Equus caballus
(horse)
Length = 97
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 agtgaaattgctgggtcatatggtcagtcta 31
|||| ||||||||||||||||||||| ||||
Sbjct: 1 agtggaattgctgggtcatatggtcactcta 31
>RF00998;mir-562;ABRN01367479.1/12070-12172 9739:Tursiops
truncatus (bottlenosed dolphin)
Length = 103
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 5 aaattgctgggtcatatggtcagtcta 31
|||||||||||||||||||| ||||||
Sbjct: 5 aaattgctgggtcatatggtaagtcta 31
>RF00998;mir-562;ABDC01118488.1/720-618 30608:Microcebus murinus
(gray mouse lemur)
Length = 103
Score = 46.1 bits (23), Expect = 8e-05
Identities = 30/31 (96%), Gaps = 1/31 (3%)
Strand = Plus / Plus
Query: 57 tttcaaagtagctgtacca-tttgcattccc 86
||||||||||||||||||| |||||||||||
Sbjct: 64 tttcaaagtagctgtaccattttgcattccc 94
>RF00998;mir-562;AP001720.1/208891-208789 9606:Homo sapiens
(human)
Length = 103
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 6 aattgctgggtcatatggtcagtctac 32
||||||||||||||||||||| |||||
Sbjct: 6 aattgctgggtcatatggtcactctac 32
>RF00998;mir-562;AAGU02099055.1/7412-7513 9785:Loxodonta africana
(African savanna elephant)
Length = 102
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 60 caaagtagctgtaccatttgcattccc 86
|||||| ||||||||||||||||||||
Sbjct: 67 caaagtggctgtaccatttgcattccc 93
>RF00998;mir-562;AAWR02009426.1/104768-104868 9796:Equus caballus
(horse)
Length = 101
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 57 tttcaaagtagctgtaccattt 78
||||||||||||||||||||||
Sbjct: 62 tttcaaagtagctgtaccattt 83
>RF00998;mir-562;ABRR01458071.1/816-714 30538:Lama pacos (alpaca)
Length = 103
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 3 tgaaattgctgggtcatatggt 24
||||||||||||||||||||||
Sbjct: 3 tgaaattgctgggtcatatggt 24
>RF00998;mir-562;AANG01643358.1/188-86 9685:Felis catus (domestic
cat)
Length = 103
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 7 attgctgggtcatatggtcagt 28
||||||||||||||||||||||
Sbjct: 7 attgctgggtcatatggtcagt 28
>RF00998;mir-562;ACBE01223239.1/3488-3386 9685:Felis catus
(domestic cat)
Length = 103
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 6 aattgctgggtcatatggtcagtcta 31
||||||||||||||||||| ||||||
Sbjct: 6 aattgctgggtcatatggtaagtcta 31
>RF00998;mir-562;ABGA01090693.1/23796-23694 9601:Pongo abelii
(Sumatran orangutan)
Length = 103
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 agtgaaattgctgggtcatatg 22
||||||||||||||||||||||
Sbjct: 1 agtgaaattgctgggtcatatg 22
>RF00998;mir-562;AANU01244682.1/47501-47399 9544:Macaca mulatta
(rhesus monkey)
Length = 103
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 agtgaaattgctgggtcatatggtca 26
||||||||||||||||| ||||||||
Sbjct: 1 agtgaaattgctgggtcgtatggtca 26
>RF00998;mir-562;AAGU02802742.1/1197-1295 9785:Loxodonta africana
(African savanna elephant)
Length = 99
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 agtgaaattgctgggtcatatggtca 26
|||| |||||||||||||||||||||
Sbjct: 1 agtggaattgctgggtcatatggtca 26
