miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01003;mir-563;AANU01196930.1/13971-14049 9544:Macaca mulatta
(rhesus monkey)
Length = 79
Score = 157 bits (79), Expect = 2e-38
Identities = 79/79 (100%)
Strand = Plus / Plus
Query: 1 agcaaagaagtgtgttgccctccaggaaatgtgtgttgctctgatgtaattaggctgaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agcaaagaagtgtgttgccctccaggaaatgtgtgttgctctgatgtaattaggctgaca 60
Query: 61 tacatttccctggtagcca 79
|||||||||||||||||||
Sbjct: 61 tacatttccctggtagcca 79
>RF01003;mir-563;AAQQ01168018.1/4796-4718 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 79
Score = 69.9 bits (35), Expect = 4e-12
Identities = 53/59 (89%)
Strand = Plus / Plus
Query: 1 agcaaagaagtgtgttgccctccaggaaatgtgtgttgctctgatgtaattaggctgac 59
|||||||| || |||||||||||||||||||| | ||||| |||||||||||||||||
Sbjct: 1 agcaaagatgtatgttgccctccaggaaatgtaaggtgctcagatgtaattaggctgac 59
>RF01003;mir-563;AACN010216273.1/3-81 9615:Canis lupus familiaris
(dog)
Length = 79
Score = 60.0 bits (30), Expect = 4e-09
Identities = 63/74 (85%)
Strand = Plus / Plus
Query: 1 agcaaagaagtgtgttgccctccaggaaatgtgtgttgctctgatgtaattaggctgaca 60
|||||||| || |||||||||| ||||||||| ||| | ||| |||||||| ||||||
Sbjct: 1 agcaaagaggtatgttgccctctaggaaatgtatgtcacactggagtaattagactgaca 60
Query: 61 tacatttccctggt 74
| ||||||||||||
Sbjct: 61 tgcatttccctggt 74
>RF01003;mir-563;ABRR01412492.1/846-765 30538:Lama pacos (alpaca)
Length = 82
Score = 46.1 bits (23), Expect = 6e-05
Identities = 59/71 (83%)
Strand = Plus / Plus
Query: 2 gcaaagaagtgtgttgccctccaggaaatgtgtgttgctctgatgtaattaggctgacat 61
||||||| |||||||||||| ||||||||| ||| || | |||||||||||||||
Sbjct: 2 gcaaagagctgtgttgccctctaggaaatgtatgtcgcattagagtaattaggctgacaa 61
Query: 62 acatttccctg 72
||||||||||
Sbjct: 62 gcatttccctg 72
>RF01003;mir-563;ACBE01326061.1/2045-2123 9685:Felis catus
(domestic cat)
Length = 79
Score = 46.1 bits (23), Expect = 6e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 agcaaagaagtgtgttgccctccaggaaatg 31
|||||||| ||||||||||||| ||||||||
Sbjct: 1 agcaaagaggtgtgttgccctctaggaaatg 31
