miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01018;mir-569;AADA01007150.1/3394-3489 9598:Pan troglodytes
(chimpanzee)
Length = 96
Score = 174 bits (88), Expect = 1e-43
Identities = 94/96 (97%)
Strand = Plus / Plus
Query: 1 ggtattgttagattaattttgtgggacattaacaacagcatcagcagcaacatcagcttt 60
||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct: 1 ggtattgttagattaattttgtgggacattaacgacagcatcagaagcaacatcagcttt 60
Query: 61 agttaatgaatcctggaaagttaagtgactttattt 96
||||||||||||||||||||||||||||||||||||
Sbjct: 61 agttaatgaatcctggaaagttaagtgactttattt 96
>RF01018;mir-569;ABRQ01300217.1/1255-1160 9813:Procavia capensis
(cape rock hyrax)
Length = 96
Score = 137 bits (69), Expect = 3e-32
Identities = 87/93 (93%)
Strand = Plus / Plus
Query: 2 gtattgttagattaattttgtgggacattaacaacagcatcagcagcaacatcagcttta 61
||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct: 2 gtattgttagattaattttgtgggacattaacagcagcatcagcagcaacattgacttta 61
Query: 62 gttaatgaatcctggaaagttaagtgactttat 94
||||||||||||||| ||||||||||||||||
Sbjct: 62 gttaatgaatcctggtgagttaagtgactttat 94
>RF01018;mir-569;ABRR01169379.1/15397-15302 30538:Lama pacos
(alpaca)
Length = 96
Score = 125 bits (63), Expect = 1e-28
Identities = 87/95 (91%)
Strand = Plus / Plus
Query: 2 gtattgttagattaattttgtgggacattaacaacagcatcagcagcaacatcagcttta 61
|||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||
Sbjct: 2 gtattgttagattaattttgtgggacattaactacagcagcagcagcaacatcaacttta 61
Query: 62 gttaatgaatcctggaaagttaagtgactttattt 96
||||||| ||||| | ||||||||| ||| |||||
Sbjct: 62 gttaatgcatcctagcaagttaagtaactctattt 96
>RF01018;mir-569;AAIY01309527.1/1347-1442 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 96
Score = 121 bits (61), Expect = 2e-27
Identities = 70/73 (95%)
Strand = Plus / Plus
Query: 1 ggtattgttagattaattttgtgggacattaacaacagcatcagcagcaacatcagcttt 60
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1 ggtattgttagattcattttgtgggacattaacaacagcatcagcagcaacatcgacttt 60
Query: 61 agttaatgaatcc 73
|||||||||||||
Sbjct: 61 agttaatgaatcc 73
>RF01018;mir-569;ABRN01129275.1/7873-7779 9739:Tursiops truncatus
(bottlenosed dolphin)
Length = 95
Score = 111 bits (56), Expect = 2e-24
Identities = 87/96 (90%), Gaps = 1/96 (1%)
Strand = Plus / Plus
Query: 1 ggtattgttagattaattttgtgggacattaacaacagcatcagcagcaacatcagcttt 60
||||||||||||||||||| ||||||||||||| ||||| ||||||||||| ||| ||||
Sbjct: 1 ggtattgttagattaattt-gtgggacattaactacagcgtcagcagcaacgtcaacttt 59
Query: 61 agttaatgaatcctggaaagttaagtgactttattt 96
|||||||||||||||| |||||||| |||| ||||
Sbjct: 60 agttaatgaatcctggcgagttaagtaacttgattt 95
>RF01018;mir-569;ABRT010181627.1/6117-6023 9478:Tarsius syrichta
(Philippine tarsier)
Length = 95
Score = 103 bits (52), Expect = 4e-22
Identities = 77/84 (91%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 13 ttaattttgtgggacattaacaacagcatcagcagcaacatcagctttagttaatgaatc 72
|||||||||||||| |||||||||||||||||||||||||||| ||| | ||||||||||
Sbjct: 13 ttaattttgtgggatattaacaacagcatcagcagcaacatcaacttca-ttaatgaatc 71
Query: 73 ctggaaagttaagtgactttattt 96
|||| ||||||||| ||||||||
Sbjct: 72 ctggcaagttaagtagctttattt 95
>RF01018;mir-569;AAPY01270647.1/842-751 37347:Tupaia belangeri
(northern tree shrew)
Length = 92
Score = 101 bits (51), Expect = 2e-21
Identities = 84/93 (90%), Gaps = 4/93 (4%)
Strand = Plus / Plus
Query: 4 attgttagattaattttgtgggacattaacaacagcatcagcagcaacatcagctttagt 63
|||||||||||| ||||||||||||||||||||| ||||||||||| || | ||||||
Sbjct: 4 attgttagatta-ttttgtgggacattaacaacaccatcagcagcagcaac---tttagt 59
Query: 64 taatgaatcctggaaagttaagtgactttattt 96
||||||||| ||| |||||||||||||||||||
Sbjct: 60 taatgaatcttggcaagttaagtgactttattt 92
>RF01018;mir-569;CAAA01079171.1/10546-10452 10090:Mus musculus
(house mouse)
Length = 95
Score = 93.7 bits (47), Expect = 4e-19
Identities = 65/71 (91%)
Strand = Plus / Plus
Query: 3 tattgttagattaattttgtgggacattaacaacagcatcagcagcaacatcagctttag 62
||||||||||||||||||||||||||||||||||| ||| |||||||||||| | ||||
Sbjct: 3 tattgttagattaattttgtgggacattaacaacaccataggcagcaacatcaaccttag 62
Query: 63 ttaatgaatcc 73
||||||||||
Sbjct: 63 ctaatgaatcc 73
>RF01018;mir-569;AAKN02051025.1/41128-41033 10141:Cavia porcellus
(domestic guinea pig)
Length = 96
Score = 79.8 bits (40), Expect = 6e-15
Identities = 82/96 (85%)
Strand = Plus / Plus
Query: 1 ggtattgttagattaattttgtgggacattaacaacagcatcagcagcaacatcagcttt 60
|||||||||||||||||||||||||||||||||| |||||||| ||||| || |||
Sbjct: 1 ggtattgttagattaattttgtgggacattaacactagcatcagtagcaatattcacttg 60
Query: 61 agttaatgaatcctggaaagttaagtgactttattt 96
| || ||||||||| ||||||||||||||||||
Sbjct: 61 acatagtgaatcctgctgagttaagtgactttattt 96
>RF01018;mir-569;ABRP01020918.1/8733-8636 132908:Pteropus vampyrus
(large flying fox)
Length = 98
Score = 77.8 bits (39), Expect = 2e-14
Identities = 63/71 (88%)
Strand = Plus / Plus
Query: 1 ggtattgttagattaattttgtgggacattaacaacagcatcagcagcaacatcagcttt 60
|||||| ||| ||||||||||||| || ||||| |||| || ||||||||||||| ||||
Sbjct: 1 ggtattattatattaattttgtggaacgttaactacagtattagcagcaacatcaacttt 60
Query: 61 agttaatgaat 71
|||||||||||
Sbjct: 61 agttaatgaat 71
>RF01018;mir-569;ABRO01034937.1/1072-977 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 96
Score = 60.0 bits (30), Expect = 5e-09
Identities = 78/94 (82%)
Strand = Plus / Plus
Query: 3 tattgttagattaattttgtgggacattaacaacagcatcagcagcaacatcagctttag 62
|||||||||||||||||| ||| ||||||| ||||| | ||||||| || || || |
Sbjct: 3 tattgttagattaattttatggaacattaataacagtagtagcagcagcagcaactgcat 62
Query: 63 ttaatgaatcctggaaagttaagtgactttattt 96
||||||||| ||| ||||| |||||||||||||
Sbjct: 63 ttaatgaatattggcaagttgagtgactttattt 96
>RF01018;mir-569;AANN01582903.1/10569-10474 9365:Erinaceus
europaeus (western European hedgehog)
Length = 96
Score = 54.0 bits (27), Expect = 3e-07
Identities = 63/75 (84%)
Strand = Plus / Plus
Query: 2 gtattgttagattaattttgtgggacattaacaacagcatcagcagcaacatcagcttta 61
||||||| ||||||||||| ||| ||||||| | |||||||||||| ||| || ||
Sbjct: 2 gtattgtgcgattaattttgcggggcattaactaaagcatcagcagcggcattgactgta 61
Query: 62 gttaatgaatcctgg 76
|||||||||||||||
Sbjct: 62 gttaatgaatcctgg 76
>RF01018;mir-569;AAGW01549046.1/1959-1870 9986:Oryctolagus
cuniculus (rabbit)
Length = 90
Score = 54.0 bits (27), Expect = 3e-07
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 9 tagattaattttgtgggacattaacaacagcatcagcagcaac 51
||||||||| || |||||||||||||||| ||||| |||||||
Sbjct: 9 tagattaatcttatgggacattaacaacaccatcaacagcaac 51
>RF01059;mir-598;AAPT01020298.1/26250-26385 7222:Drosophila
grimshawi
Length = 136
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 27 cattaacaacagcatcagcagcaacatcagc 57
|||||||||||||| ||||||||||| ||||
Sbjct: 44 cattaacaacagcaacagcagcaacaacagc 14
>RF01018;mir-569;AAGU02012487.1/4667-4599 9785:Loxodonta africana
(African savanna elephant)
Length = 69
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 13 ttaattttgtgggacattaaca 34
||||||||||||||||||||||
Sbjct: 1 ttaattttgtgggacattaaca 22
