miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;DQ995513.1/14600-14508 4513:Hordeum vulgare
Length = 93
Score = 91.7 bits (46), Expect = 2e-18
Identities = 73/82 (89%)
Strand = Plus / Minus
Query: 13 ccctctggaaacaaatataagagtgtttagaacactattttagtgatctaaacgctctta 72
||||||| ||| ||||||||||| ||||||| ||||| || |||||||||||||||||||
Sbjct: 85 ccctctgtaaagaaatataagagcgtttagatcactacttcagtgatctaaacgctctta 26
Query: 73 catttctttaccgagggagtag 94
|||||||||| |||| |||||
Sbjct: 25 tatttctttacagaggtagtag 4
Score = 71.9 bits (36), Expect = 1e-12
Identities = 66/76 (86%)
Strand = Plus / Plus
Query: 14 cctctggaaacaaatataagagtgtttagaacactattttagtgatctaaacgctcttac 73
|||||| ||| ||||||||||| ||||||| |||| ||||||||||||||||||||
Sbjct: 10 cctctgtaaagaaatataagagcgtttagatcactgaagtagtgatctaaacgctcttat 69
Query: 74 atttctttaccgaggg 89
|||||||||| |||||
Sbjct: 70 atttctttacagaggg 85
>RF00906;MIR1122;AJ302096.1/1385-1477 4573:Aegilops speltoides
Length = 93
Score = 91.7 bits (46), Expect = 2e-18
Identities = 79/90 (87%)
Strand = Plus / Plus
Query: 5 ctagtattccctctggaaacaaatataagagtgtttagaacactattttagtgatctaaa 64
|||||| |||||||| |||| |||||||||| ||||||| |||||||||||| ||||||
Sbjct: 1 ctagtactccctctgtaaactaatataagagcgtttagatcactattttagtattctaaa 60
Query: 65 cgctcttacatttctttaccgagggagtag 94
|||||||| ||| ||||| ||||||||||
Sbjct: 61 cgctcttatattagtttacggagggagtag 90
Score = 67.9 bits (34), Expect = 2e-11
Identities = 70/82 (85%)
Strand = Plus / Minus
Query: 12 tccctctggaaacaaatataagagtgtttagaacactattttagtgatctaaacgctctt 71
|||||| | |||| |||||||||| |||||||| |||| |||||||||||||||||||
Sbjct: 86 tccctccgtaaactaatataagagcgtttagaatactaaaatagtgatctaaacgctctt 27
Query: 72 acatttctttaccgagggagta 93
| ||| ||||| |||||||||
Sbjct: 26 atattagtttacagagggagta 5
>RF00906;MIR1122;AY368673.1/832-740 4571:Triticum turgidum
Length = 93
Score = 85.7 bits (43), Expect = 1e-16
Identities = 61/67 (91%)
Strand = Plus / Plus
Query: 26 aatataagagtgtttagaacactattttagtgatctaaacgctcttacatttctttaccg 85
||||||||||||||| || |||||||||||||||||||||||||||| ||| ||||| |
Sbjct: 22 aatataagagtgttttgatcactattttagtgatctaaacgctcttatattagtttactg 81
Query: 86 agggagt 92
|||||||
Sbjct: 82 agggagt 88
>RF00906;MIR1122;AB178167.1/826-734 4565:Triticum aestivum (bread
wheat)
Length = 93
Score = 85.7 bits (43), Expect = 1e-16
Identities = 73/83 (87%)
Strand = Plus / Plus
Query: 12 tccctctggaaacaaatataagagtgtttagaacactattttagtgatctaaacgctctt 71
|||||| | |||| |||||||||||||||||| |||||||||| |||| |||| ||||||
Sbjct: 8 tccctccgtaaactaatataagagtgtttagatcactattttaatgatttaaatgctctt 67
Query: 72 acatttctttaccgagggagtag 94
| ||| ||||||||||||||||
Sbjct: 68 atattagtttaccgagggagtag 90
Score = 44.1 bits (22), Expect = 3e-04
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 53 tagtgatctaaacgctcttacatttctttaccgagggagtag 94
||||||||||||| |||||| ||| ||||| ||||||||||
Sbjct: 45 tagtgatctaaacactcttatattagtttacggagggagtag 4
>RF00906;MIR1122;FJ711024.1/1206-1298 37717:Agropyron mongolicum
Length = 93
Score = 85.7 bits (43), Expect = 1e-16
Identities = 67/75 (89%)
Strand = Plus / Minus
Query: 21 aaacaaatataagagtgtttagaacactattttagtgatctaaacgctcttacatttctt 80
|||| |||||||||| ||||||| |||||||||||||||| ||||||||||| ||| ||
Sbjct: 77 aaactaatataagagcgtttagatcactattttagtgatccaaacgctcttatattaatt 18
Query: 81 taccgagggagtaga 95
||| |||||||||||
Sbjct: 17 tacagagggagtaga 3
Score = 50.1 bits (25), Expect = 5e-06
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 12 tccctctggaaacaaatataagagtgtttagaacactattttagtgatctaaacgctctt 71
|||||||| ||| |||||||||| |||| || ||||| |||||||||||||||||||
Sbjct: 8 tccctctgtaaattaatataagagcgtttggatcactaaaatagtgatctaaacgctctt 67
Query: 72 a 72
|
Sbjct: 68 a 68
>RF00906;MIR1122;EU200767.1/3655-3563 37682:Aegilops tauschii
Length = 93
Score = 85.7 bits (43), Expect = 1e-16
Identities = 76/87 (87%)
Strand = Plus / Minus
Query: 7 agtattccctctggaaacaaatataagagtgtttagaacactattttagtgatctaaacg 66
|||| |||||| | ||| ||||||||||| ||||||| ||||||||||| ||||||||||
Sbjct: 91 agtagtccctcagtaaagaaatataagagcgtttagatcactattttagagatctaaacg 32
Query: 67 ctcttacatttctttaccgagggagta 93
| |||| |||| ||||| |||||||||
Sbjct: 31 cccttatatttgtttacagagggagta 5
Score = 83.8 bits (42), Expect = 4e-16
Identities = 75/86 (87%)
Strand = Plus / Plus
Query: 5 ctagtattccctctggaaacaaatataagagtgtttagaacactattttagtgatctaaa 64
|||||| |||||||| ||||||||||||| | ||||||| | ||| ||||||||||||
Sbjct: 1 ctagtactccctctgtaaacaaatataagggcgtttagatctctaaaatagtgatctaaa 60
Query: 65 cgctcttacatttctttaccgaggga 90
|||||||| |||||||||| ||||||
Sbjct: 61 cgctcttatatttctttactgaggga 86
>RF00906;MIR1122;EU183492.1/3479-3389 37682:Aegilops tauschii
Length = 91
Score = 85.7 bits (43), Expect = 1e-16
Identities = 73/82 (89%), Gaps = 2/82 (2%)
Strand = Plus / Minus
Query: 12 tccctctggaaacaaatataagagtgtttagaacactattttagtgatctaaacgctctt 71
|||||||| ||| ||||||||||||||||||| ||||| |||||||||||||| | |||
Sbjct: 84 tccctctgtaaagaaatataagagtgtttagatcactactttagtgatctaaa--cactt 27
Query: 72 acatttctttaccgagggagta 93
|||||| ||||| |||||||||
Sbjct: 26 acatttatttacggagggagta 5
Score = 63.9 bits (32), Expect = 4e-10
Identities = 53/60 (88%)
Strand = Plus / Plus
Query: 34 agtgtttagaacactattttagtgatctaaacgctcttacatttctttaccgagggagta 93
|||||||||| ||||| ||||||||||||| |||||| |||||||||| |||||||||
Sbjct: 28 agtgtttagatcactaaagtagtgatctaaacactcttatatttctttacagagggagta 87
>RF00906;MIR1122;DQ885765.1/4441-4533 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 83.8 bits (42), Expect = 4e-16
Identities = 72/82 (87%)
Strand = Plus / Plus
Query: 12 tccctctggaaacaaatataagagtgtttagaacactattttagtgatctaaacgctctt 71
|||||||| |||| |||||||||| || ||| ||||| |||||||||||||| ||||||
Sbjct: 8 tccctctgtaaactaatataagagcattcagatcactactttagtgatctaaatgctctt 67
Query: 72 acatttctttaccgagggagta 93
| |||||||||| |||||||||
Sbjct: 68 atatttctttacggagggagta 89
Score = 44.1 bits (22), Expect = 3e-04
Identities = 67/82 (81%)
Strand = Plus / Minus
Query: 12 tccctctggaaacaaatataagagtgtttagaacactattttagtgatctaaacgctctt 71
|||||| | ||| ||||||||||| |||||| ||||| ||||||||| || ||||||
Sbjct: 86 tccctccgtaaagaaatataagagcatttagatcactaaagtagtgatctgaatgctctt 27
Query: 72 acatttctttaccgagggagta 93
| ||| ||||| |||||||||
Sbjct: 26 atattagtttacagagggagta 5
>RF00906;MIR1122;EU660896.1/71755-71663 4572:Triticum urartu
Length = 93
Score = 83.8 bits (42), Expect = 4e-16
Identities = 72/82 (87%)
Strand = Plus / Minus
Query: 12 tccctctggaaacaaatataagagtgtttagaacactattttagtgatctaaacgctctt 71
|||||| | |||| |||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 86 tccctccgtaaactaatataagagcgtttagaacactattttagtgatctaaacactctt 27
Query: 72 acatttctttaccgagggagta 93
| ||| |||| |||||||||
Sbjct: 26 atattggtttatagagggagta 5
Score = 69.9 bits (35), Expect = 6e-12
Identities = 71/83 (85%)
Strand = Plus / Plus
Query: 12 tccctctggaaacaaatataagagtgtttagaacactattttagtgatctaaacgctctt 71
||||||| |||| |||||||||||||||||| ||||| ||||| |||||||||||||
Sbjct: 8 tccctctataaaccaatataagagtgtttagatcactaaaatagtgttctaaacgctctt 67
Query: 72 acatttctttaccgagggagtag 94
| ||| ||||| ||||||||||
Sbjct: 68 atattagtttacggagggagtag 90
>RF00906;MIR1122;EU660903.1/5594-5502 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 83.8 bits (42), Expect = 4e-16
Identities = 72/82 (87%)
Strand = Plus / Minus
Query: 12 tccctctggaaacaaatataagagtgtttagaacactattttagtgatctaaacgctctt 71
||||||| ||| ||||||||||| |||||| |||| ||||||| |||||||||||||
Sbjct: 86 tccctctataaagaaatataagagcatttagataactactttagtgctctaaacgctctt 27
Query: 72 acatttctttaccgagggagta 93
| ||||||||||||||||||||
Sbjct: 26 atatttctttaccgagggagta 5
Score = 61.9 bits (31), Expect = 1e-09
Identities = 73/87 (83%)
Strand = Plus / Plus
Query: 7 agtattccctctggaaacaaatataagagtgtttagaacactattttagtgatctaaacg 66
|||| |||||| | ||| ||||||||||| ||||||| ||||| |||| ||||||| |
Sbjct: 3 agtactccctcggtaaagaaatataagagcgtttagagcactaaagtagttatctaaatg 62
Query: 67 ctcttacatttctttaccgagggagta 93
|||||| ||||||||| |||||||||
Sbjct: 63 ctcttatatttctttatagagggagta 89
>RF00906;MIR1122;FM164415.1/12272-12364 4513:Hordeum vulgare
Length = 93
Score = 83.8 bits (42), Expect = 4e-16
Identities = 72/82 (87%)
Strand = Plus / Minus
Query: 12 tccctctggaaacaaatataagagtgtttagaacactattttagtgatctaaacgctctt 71
|||||| | ||| ||||||||||||||||||| |||| |||||||||||| ||||||||
Sbjct: 86 tccctccgtaaagaaatataagagtgtttagataactactttagtgatctagacgctctt 27
Query: 72 acatttctttaccgagggagta 93
| |||||||||| || ||||||
Sbjct: 26 atatttctttacagaaggagta 5
Score = 61.9 bits (31), Expect = 1e-09
Identities = 67/79 (84%)
Strand = Plus / Plus
Query: 16 tctggaaacaaatataagagtgtttagaacactattttagtgatctaaacgctcttacat 75
|||| ||| ||||||||||| || |||| ||||| |||| |||||||| |||||| ||
Sbjct: 12 tctgtaaagaaatataagagcgtctagatcactaaagtagttatctaaacactcttatat 71
Query: 76 ttctttaccgagggagtag 94
|||||||| ||||||||||
Sbjct: 72 ttctttacggagggagtag 90
>RF00906;MIR1122;AM932685.1/163196-163288 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 81.8 bits (41), Expect = 2e-15
Identities = 74/85 (87%)
Strand = Plus / Plus
Query: 12 tccctctggaaacaaatataagagtgtttagaacactattttagtgatctaaacgctctt 71
|||||||| |||| |||||||||| | ||||| ||||| ||||||||||||| |||||||
Sbjct: 8 tccctctgtaaactaatataagagcgcttagatcactactttagtgatctaagcgctctt 67
Query: 72 acatttctttaccgagggagtagat 96
| ||| ||||| ||||||||||||
Sbjct: 68 atattagtttacagagggagtagat 92
Score = 60.0 bits (30), Expect = 6e-09
Identities = 69/82 (84%)
Strand = Plus / Minus
Query: 12 tccctctggaaacaaatataagagtgtttagaacactattttagtgatctaaacgctctt 71
|||||||| |||| |||||||||| | ||||| ||||| ||||||||||| |||||||
Sbjct: 86 tccctctgtaaactaatataagagcgcttagatcactaaagtagtgatctaagcgctctt 27
Query: 72 acatttctttaccgagggagta 93
| ||| ||||| |||||||||
Sbjct: 26 atattagtttacagagggagta 5
>RF00906;MIR1122;AM932680.1/146155-146063 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 79.8 bits (40), Expect = 6e-15
Identities = 70/80 (87%)
Strand = Plus / Minus
Query: 14 cctctggaaacaaatataagagtgtttagaacactattttagtgatctaaacgctcttac 73
|||||| |||| |||||||||| |||||| |||||||||||||| |||||||||||||
Sbjct: 84 cctctgtaaactaatataagagcatttagatcactattttagtgacctaaacgctcttat 25
Query: 74 atttctttaccgagggagta 93
||| ||||| |||||||||
Sbjct: 24 attagtttacggagggagta 5
Score = 48.1 bits (24), Expect = 2e-05
Identities = 72/88 (81%)
Strand = Plus / Plus
Query: 6 tagtattccctctggaaacaaatataagagtgtttagaacactattttagtgatctaaac 65
||||| |||||| | |||| |||||||||| |||||| ||||| ||||||||||||
Sbjct: 2 tagtactccctccgtaaactaatataagagcgtttaggtcactaaaatagtgatctaaat 61
Query: 66 gctcttacatttctttaccgagggagta 93
||||||| ||| ||||| |||| ||||
Sbjct: 62 gctcttatattagtttacagaggaagta 89
>RF00906;MIR1122;X83518.1/7623-7532 4513:Hordeum vulgare
Length = 92
Score = 79.8 bits (40), Expect = 6e-15
Identities = 61/68 (89%)
Strand = Plus / Minus
Query: 26 aatataagagtgtttagaacactattttagtgatctaaacgctcttacatttctttaccg 85
|||||||||| ||||||| ||||| |||||||||||||||||||||| ||| ||||| |
Sbjct: 72 aatataagagcgtttagatcactactttagtgatctaaacgctcttatattagtttacag 13
Query: 86 agggagta 93
||||||||
Sbjct: 12 agggagta 5
Score = 65.9 bits (33), Expect = 9e-11
Identities = 54/61 (88%)
Strand = Plus / Plus
Query: 12 tccctctggaaacaaatataagagtgtttagaacactattttagtgatctaaacgctctt 71
|||||||| |||| |||||||||| ||||||| ||||| |||||||||||||||||||
Sbjct: 8 tccctctgtaaactaatataagagcgtttagatcactaaagtagtgatctaaacgctctt 67
Query: 72 a 72
|
Sbjct: 68 a 68
>RF00906;MIR1122;AJ507214.1/4285-4377 4513:Hordeum vulgare
Length = 93
Score = 77.8 bits (39), Expect = 2e-14
Identities = 60/67 (89%)
Strand = Plus / Plus
Query: 15 ctctggaaacaaatataagagtgtttagaacactattttagtgatctaaacgctcttaca 74
||||| ||||||||||||||| ||||||| ||||| |||||||||||| || |||||| |
Sbjct: 11 ctctgtaaacaaatataagagcgtttagatcactactttagtgatctagacactcttata 70
Query: 75 tttcttt 81
|||||||
Sbjct: 71 tttcttt 77
Score = 61.9 bits (31), Expect = 1e-09
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 25 aaatataagagtgtttagaacactattttagtgatctaaacgctcttacatttctttac 83
|||||||||||||| |||| ||||| |||||||||||||||||||| |||| |||||
Sbjct: 73 aaatataagagtgtctagatcactaaagtagtgatctaaacgctcttatatttgtttac 15
>RF00906;MIR1122;AJ400713.1/2799-2707 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 75.8 bits (38), Expect = 9e-14
Identities = 71/82 (86%)
Strand = Plus / Minus
Query: 12 tccctctggaaacaaatataagagtgtttagaacactattttagtgatctaaacgctctt 71
|||||| | |||| |||||||||| ||||||| ||||||||||||||||||| ||||||
Sbjct: 86 tccctccgtaaactaatataagagcgtttagattactattttagtgatctaaatgctctt 27
Query: 72 acatttctttaccgagggagta 93
| ||| ||||| |||||||||
Sbjct: 26 atattagtttacagagggagta 5
Score = 60.0 bits (30), Expect = 6e-09
Identities = 69/82 (84%)
Strand = Plus / Plus
Query: 12 tccctctggaaacaaatataagagtgtttagaacactattttagtgatctaaacgctctt 71
|||||||| |||| |||||||||| |||||| ||||| |||| ||||||||||||||
Sbjct: 8 tccctctgtaaactaatataagagcatttagatcactaaaatagtaatctaaacgctctt 67
Query: 72 acatttctttaccgagggagta 93
| ||| ||||| |||||||||
Sbjct: 68 atattagtttacggagggagta 89
>RF00906;MIR1122;DQ537336.1/26726-26824 4565:Triticum aestivum
(bread wheat)
Length = 99
Score = 71.9 bits (36), Expect = 1e-12
Identities = 45/48 (93%)
Strand = Plus / Minus
Query: 46 actattttagtgatctaaacgctcttacatttctttaccgagggagta 93
||||||||||||||||||||| ||||| |||||||||| |||||||||
Sbjct: 52 actattttagtgatctaaacgatcttatatttctttacagagggagta 5
>RF00906;MIR1122;AM000057.1/1342-1250 4513:Hordeum vulgare
Length = 93
Score = 71.9 bits (36), Expect = 1e-12
Identities = 75/88 (85%)
Strand = Plus / Minus
Query: 7 agtattccctctggaaacaaatataagagtgtttagaacactattttagtgatctaaacg 66
|||| |||| ||| |||| ||||||| || |||||||||||| |||||| |||||||||
Sbjct: 91 agtactccccctgtaaactaatataaaagcatttagaacactactttagtaatctaaacg 32
Query: 67 ctcttacatttctttaccgagggagtag 94
|||||| ||| ||||| ||||||||||
Sbjct: 31 ctcttatattagtttacagagggagtag 4
>RF00906;MIR1122;AF277253.1/801-887 58935:Australopyrum velutinum
Length = 87
Score = 71.9 bits (36), Expect = 1e-12
Identities = 74/87 (85%), Gaps = 6/87 (6%)
Strand = Plus / Minus
Query: 7 agtattccctctggaaacaaatataagagtgtttagaacactattttagtgatctaaacg 66
|||| |||||||| ||| ||||||||||| ||||||| |||||| ||||||||||
Sbjct: 85 agtactccctctgtaaagaaatataagagcgtttagatcactat------gatctaaacg 32
Query: 67 ctcttacatttctttaccgagggagta 93
|||||| |||||||||| |||||||||
Sbjct: 31 ctcttatatttctttacagagggagta 5
Score = 69.9 bits (35), Expect = 6e-12
Identities = 70/82 (85%), Gaps = 6/82 (7%)
Strand = Plus / Plus
Query: 12 tccctctggaaacaaatataagagtgtttagaacactattttagtgatctaaacgctctt 71
|||||||| ||| ||||||||||| ||||||| || |||||||||||||||||||
Sbjct: 8 tccctctgtaaagaaatataagagcgtttagatca------tagtgatctaaacgctctt 61
Query: 72 acatttctttaccgagggagta 93
| |||||||||| |||||||||
Sbjct: 62 atatttctttacagagggagta 83
>RF00906;MIR1122;AB298185.1/20826-20734 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 67.9 bits (34), Expect = 2e-11
Identities = 70/82 (85%)
Strand = Plus / Minus
Query: 12 tccctctggaaacaaatataagagtgtttagaacactattttagtgatctaaacgctctt 71
|||||||| |||| ||||||||| ||||||| |||||||||||| |||||||||| ||
Sbjct: 86 tccctctgtaaactaatataagaacgtttagatcactattttagtattctaaacgctttt 27
Query: 72 acatttctttaccgagggagta 93
| ||| ||||| |||||||||
Sbjct: 26 atattagtttacggagggagta 5
Score = 52.0 bits (26), Expect = 1e-06
Identities = 68/82 (82%)
Strand = Plus / Plus
Query: 12 tccctctggaaacaaatataagagtgtttagaacactattttagtgatctaaacgctctt 71
|||||| | |||| ||||||| || |||||||| |||| |||||||||||||| ||||
Sbjct: 8 tccctccgtaaactaatataaaagcgtttagaatactaaaatagtgatctaaacgttctt 67
Query: 72 acatttctttaccgagggagta 93
| ||| ||||| |||||||||
Sbjct: 68 atattagtttacagagggagta 89
>RF00906;MIR1122;AY747601.1/4943-5034 4565:Triticum aestivum
(bread wheat)
Length = 92
Score = 65.9 bits (33), Expect = 9e-11
Identities = 63/73 (86%)
Strand = Plus / Minus
Query: 21 aaacaaatataagagtgtttagaacactattttagtgatctaaacgctcttacatttctt 80
||||||||||||||| ||| ||| |||| |||||| ||||||||||||| |||||||
Sbjct: 77 aaacaaatataagagcgttcagatcactcaagtagtgacctaaacgctcttatatttctt 18
Query: 81 taccgagggagta 93
||| |||||||||
Sbjct: 17 tacggagggagta 5
Score = 60.0 bits (30), Expect = 6e-09
Identities = 70/82 (85%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 12 tccctctggaaacaaatataagagtgtttagaacactattttagtgatctaaacgctctt 71
|||||| | ||| ||||||||||| |||||| ||||| || |||||||| |||||||||
Sbjct: 8 tccctccgtaaagaaatataagagcgtttaggtcactacttgagtgatctgaacgctctt 67
Query: 72 acatttctttaccgagggagta 93
| |||| |||||| ||||||||
Sbjct: 68 atatttgtttacc-agggagta 88
>RF00906;MIR1122;EF067844.1/459123-459031 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 93
Score = 65.9 bits (33), Expect = 9e-11
Identities = 63/73 (86%)
Strand = Plus / Minus
Query: 21 aaacaaatataagagtgtttagaacactattttagtgatctaaacgctcttacatttctt 80
|||| |||||||||| ||||||||||||||||||| ||||||| |||||| ||| ||
Sbjct: 77 aaactaatataagagcatttagaacactattttagtaatctaaatactcttatattagtt 18
Query: 81 taccgagggagta 93
||| |||||||||
Sbjct: 17 tacagagggagta 5
>RF00906;MIR1122;EU835198.1/56667-56575 85692:Triticum turgidum
subsp. dicoccoides
Length = 93
Score = 61.9 bits (31), Expect = 1e-09
Identities = 73/87 (83%)
Strand = Plus / Plus
Query: 7 agtattccctctggaaacaaatataagagtgtttagaacactattttagtgatctaaacg 66
|||| |||||||| |||| |||||||||||||||||| ||||| |||||| || ||||
Sbjct: 3 agtactccctctgtaaactaatataagagtgtttagatcactagtttagtaatttaaaaa 62
Query: 67 ctcttacatttctttaccgagggagta 93
|| ||| ||| ||||| |||||||||
Sbjct: 63 cttttatattagtttacagagggagta 89
Score = 44.1 bits (22), Expect = 3e-04
Identities = 67/82 (81%)
Strand = Plus / Minus
Query: 12 tccctctggaaacaaatataagagtgtttagaacactattttagtgatctaaacgctctt 71
|||||||| |||| ||||||| ||| |||| | |||| ||||||||||||| |||||
Sbjct: 86 tccctctgtaaactaatataaaagtttttaaattactaaactagtgatctaaacactctt 27
Query: 72 acatttctttaccgagggagta 93
| ||| ||||| |||||||||
Sbjct: 26 atattagtttacagagggagta 5
>RF00906;MIR1122;AY133248.1/2807-2899 37682:Aegilops tauschii
Length = 93
Score = 61.9 bits (31), Expect = 1e-09
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 26 aatataagagtgtttagaacactattttagtgatctaaacgctctta 72
|||||||||| ||||||| |||| ||||||||||||||||||||||
Sbjct: 22 aatataagagcgtttagattactactttagtgatctaaacgctctta 68
Score = 52.0 bits (26), Expect = 1e-06
Identities = 56/66 (84%)
Strand = Plus / Minus
Query: 28 tataagagtgtttagaacactattttagtgatctaaacgctcttacatttctttaccgag 87
|||||||| ||||||| ||||| |||| ||||||||||||||| ||| ||||| |||
Sbjct: 70 tataagagcgtttagatcactaaagtagtaatctaaacgctcttatattaatttacggag 11
Query: 88 ggagta 93
||||||
Sbjct: 10 ggagta 5
>RF00906;MIR1122;EF540321.1/152068-151976 4571:Triticum turgidum
Length = 93
Score = 60.0 bits (30), Expect = 6e-09
Identities = 69/82 (84%)
Strand = Plus / Plus
Query: 12 tccctctggaaacaaatataagagtgtttagaacactattttagtgatctaaacgctctt 71
|||||| | |||| |||||||||||||||||| |||| |||||||||||||| | | ||
Sbjct: 8 tccctccgtaaactaatataagagtgtttagattactactttagtgatctaaatgttttt 67
Query: 72 acatttctttaccgagggagta 93
| ||| ||||| |||||||||
Sbjct: 68 atattagtttacagagggagta 89
>RF00906;MIR1122;FJ436985.1/28643-28733 4565:Triticum aestivum
(bread wheat)
Length = 91
Score = 60.0 bits (30), Expect = 6e-09
Identities = 75/89 (84%), Gaps = 2/89 (2%)
Strand = Plus / Minus
Query: 5 ctagtattccctctggaaacaaatataagagtgtttagaacactattttagtgatctaaa 64
|||||| |||||| | |||| ||||||| || ||||||||| ||||||||| |||||||
Sbjct: 91 ctagtactccctccgtaaactaatataatagcgtttagaac--tattttagttatctaaa 34
Query: 65 cgctcttacatttctttaccgagggagta 93
| |||||| ||| ||||| |||||||||
Sbjct: 33 cactcttatattagtttacagagggagta 5
Score = 52.0 bits (26), Expect = 1e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 6 tagtattccctctggaaacaaatataagagtgtttaga 43
||||| |||||||| |||| ||||||||||||||||||
Sbjct: 2 tagtactccctctgtaaactaatataagagtgtttaga 39
>RF00906;MIR1122;X65606.1/2347-2255 4513:Hordeum vulgare
Length = 93
Score = 60.0 bits (30), Expect = 6e-09
Identities = 69/82 (84%)
Strand = Plus / Minus
Query: 12 tccctctggaaacaaatataagagtgtttagaacactattttagtgatctaaacgctctt 71
|||||||| ||| |||||||||| |||||| |||| ||||||||||||||| ||||
Sbjct: 86 tccctctgtaaagaaatataagatcatttagataactactttagtgatctaaacattctt 27
Query: 72 acatttctttaccgagggagta 93
| |||||| ||| |||||||||
Sbjct: 26 atatttctgtacggagggagta 5
>RF00906;MIR1122;FJ436986.1/53497-53587 37682:Aegilops tauschii
Length = 91
Score = 60.0 bits (30), Expect = 6e-09
Identities = 75/89 (84%), Gaps = 2/89 (2%)
Strand = Plus / Minus
Query: 5 ctagtattccctctggaaacaaatataagagtgtttagaacactattttagtgatctaaa 64
|||||| |||||| | |||| |||||||||| ||||||||| ||||||||| |||||||
Sbjct: 91 ctagtactccctccgtaaactaatataagagcgtttagaac--tattttagttatctaaa 34
Query: 65 cgctcttacatttctttaccgagggagta 93
| || ||| ||| ||||| |||||||||
Sbjct: 33 cacttttatattagtttacagagggagta 5
>RF00906;MIR1122;EU835198.1/64297-64202 85692:Triticum turgidum
subsp. dicoccoides
Length = 96
Score = 56.0 bits (28), Expect = 9e-08
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 46 actattttagtgatctaaacgctcttacatttctttaccgagggagta 93
||||||||||||||||| |||||||| |||||||||| || ||||||
Sbjct: 45 actattttagtgatctagacgctcttgtatttctttacggatggagta 92
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 53 tagtgatctaaacgctcttacatttctttac 83
|||||||||||||| ||||| ||||||||||
Sbjct: 45 tagtgatctaaacgttcttatatttctttac 15
>RF00906;MIR1122;DQ295068.1/1030-931 4550:Secale cereale (rye)
Length = 100
Score = 56.0 bits (28), Expect = 9e-08
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 38 tttagaacactattttagtgatctaaacgctcttacatttctttaccgagggagta 93
|||||| ||||| |||||||||||||| ||||||| ||| ||||| |||||||||
Sbjct: 60 tttagatcactactttagtgatctaaaagctcttatattagtttacagagggagta 5
Score = 44.1 bits (22), Expect = 3e-04
Identities = 49/58 (84%)
Strand = Plus / Plus
Query: 7 agtattccctctggaaacaaatataagagtgtttagaacactattttagtgatctaaa 64
|||| |||||||| |||| |||||||||| |||||| ||||| ||||||||||||
Sbjct: 3 agtactccctctgtaaactaatataagagcttttagatcactaaagtagtgatctaaa 60
>RF00906;MIR1122;AF458279.1/188-280 4568:Triticum monococcum
Length = 93
Score = 54.0 bits (27), Expect = 3e-07
Identities = 72/87 (82%)
Strand = Plus / Plus
Query: 7 agtattccctctggaaacaaatataagagtgtttagaacactattttagtgatctaaacg 66
||||||||||||| |||| ||||||||| |||||| ||||| |||||||||||| |
Sbjct: 3 agtattccctctgtaaactaatataagaccttttagatcactaaagtagtgatctaaaag 62
Query: 67 ctcttacatttctttaccgagggagta 93
||||| ||| ||||| |||||||||
Sbjct: 63 gtcttatattagtttacagagggagta 89
Score = 54.0 bits (27), Expect = 3e-07
Identities = 66/79 (83%)
Strand = Plus / Minus
Query: 12 tccctctggaaacaaatataagagtgtttagaacactattttagtgatctaaacgctctt 71
|||||||| |||| ||||||||| |||||| ||||| |||||||||||||| | ||||
Sbjct: 86 tccctctgtaaactaatataagaccttttagatcactactttagtgatctaaaaggtctt 27
Query: 72 acatttctttaccgaggga 90
| ||| ||||| ||||||
Sbjct: 26 atattagtttacagaggga 8
>RF00906;MIR1122;EU626553.1/72905-73004 4572:Triticum urartu
Length = 100
Score = 52.0 bits (26), Expect = 1e-06
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 45 cactattttagtgatctaaacgctcttacatttctttaccgagggagtag 94
|||||||||||||||||||| ||||||| ||| ||||| ||||| ||||
Sbjct: 53 cactattttagtgatctaaatgctcttatattagtttacagagggggtag 4
>RF00906;MIR1122;AK251798.1/892-984 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 93
Score = 50.1 bits (25), Expect = 5e-06
Identities = 61/73 (83%)
Strand = Plus / Minus
Query: 21 aaacaaatataagagtgtttagaacactattttagtgatctaaacgctcttacatttctt 80
|||| |||||||||| |||||||||||| || ||| ||||||| | ||||| ||| ||
Sbjct: 77 aaactaatataagagcatttagaacactacttcagtaatctaaatgttcttatattagtt 18
Query: 81 taccgagggagta 93
||| |||||||||
Sbjct: 17 tacggagggagta 5
>RF00906;MIR1122;AK248998.1/1925-1844 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 82
Score = 46.1 bits (23), Expect = 8e-05
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 53 tagtgatctaaacgctcttacatttctttaccgagggag 91
|||||||||||| | ||||| |||||||||| |||||||
Sbjct: 38 tagtgatctaaatgatcttatatttctttacagagggag 76
>RF00906;MIR1122;EU282300.1/610-519 97361:Hordeum murinum
Length = 92
Score = 46.1 bits (23), Expect = 8e-05
Identities = 54/63 (85%), Gaps = 1/63 (1%)
Strand = Plus / Minus
Query: 6 tagtattccctctggaaacaaatataagagtgtttagaacactattttagtgatctaaac 65
||||| |||||||| |||| |||||||||| |||||| ||||| || | ||||||||||
Sbjct: 91 tagtactccctctgtaaactaatataagagcatttagatcactacttaa-tgatctaaac 33
Query: 66 gct 68
|||
Sbjct: 32 gct 30
>RF00906;MIR1122;AF458277.1/188-282 85692:Triticum turgidum subsp.
dicoccoides
Length = 95
Score = 44.1 bits (22), Expect = 3e-04
Identities = 73/89 (82%), Gaps = 2/89 (2%)
Strand = Plus / Plus
Query: 7 agtattccctctggaaacaaatataagagtgtttagaacacta--ttttagtgatctaaa 64
||||||||||||| |||| ||||||||| |||||| ||||| | ||||||||||||
Sbjct: 3 agtattccctctgtaaactaatataagaccttttagatcactaagtagtagtgatctaaa 62
Query: 65 cgctcttacatttctttaccgagggagta 93
| ||||| ||| ||||| |||||||||
Sbjct: 63 aggtcttatattagtttacagagggagta 91
>RF00906;MIR1122;EU282299.1/528-618 97361:Hordeum murinum
Length = 91
Score = 44.1 bits (22), Expect = 3e-04
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 53 tagtgatctaaacgctcttacatttctttaccgagggagtag 94
|||||||||||| ||||||| ||| ||||| ||||||||||
Sbjct: 47 tagtgatctaaatgctcttatattagtttacggagggagtag 88
