miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00742;MIR162_2;AB006708.1/30672-30582 3702:Arabidopsis thaliana
(thale cress)
Length = 91
Score = 73.8 bits (37), Expect = 4e-13
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 9 cgctggaggcagcggttcatcgatcaattcctgtgaa 45
|||||||||||||||||||||||||||||||||||||
Sbjct: 1 cgctggaggcagcggttcatcgatcaattcctgtgaa 37
>RF00742;MIR162_2;AASG02018381.1/677-582 3988:Ricinus communis
(castor bean)
Length = 96
Score = 63.9 bits (32), Expect = 4e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 76 gcatgaatcgatcgataaacctctgcatccag 107
||||||||||||||||||||||||||||||||
Sbjct: 64 gcatgaatcgatcgataaacctctgcatccag 95
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 ctggaggcagcggttcatcgatc 33
|||||||||||||||||||||||
Sbjct: 3 ctggaggcagcggttcatcgatc 25
>RF00742;MIR162_2;ABIM01004242.1/4343-4433 3649:Carica papaya
(papaya)
Length = 91
Score = 61.9 bits (31), Expect = 2e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 77 catgaatcgatcgataaacctctgcatccag 107
|||||||||||||||||||||||||||||||
Sbjct: 60 catgaatcgatcgataaacctctgcatccag 90
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 ctggaggcagcggttcatcgatc 33
|||||||||||||||||||||||
Sbjct: 3 ctggaggcagcggttcatcgatc 25
>RF00742;MIR162_2;EU548677.1/192-105 3702:Arabidopsis thaliana
(thale cress)
Length = 88
Score = 60.0 bits (30), Expect = 7e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 74 aagcatgaatcgatcgataaacctctgcatccag 107
|||||||||| |||||||||||||||||||||||
Sbjct: 54 aagcatgaatagatcgataaacctctgcatccag 87
Score = 58.0 bits (29), Expect = 3e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 9 cgctggaggcagcggttcatcgatcaattcctgtgaa 45
||||||||||||||||||||||||| ||||||||||
Sbjct: 1 cgctggaggcagcggttcatcgatctcttcctgtgaa 37
>RF00742;MIR162_2;AK073954.1/290-447 39947:Oryza sativa Japonica
Group
Length = 158
Score = 58.0 bits (29), Expect = 3e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 80 gaatcgatcgataaacctctgcatccagt 108
|||||||||||||||||||||||||||||
Sbjct: 130 gaatcgatcgataaacctctgcatccagt 158
>RF00742;MIR162_2;AAAA02006876.1/21311-21153 39946:Oryza sativa
Indica Group
Length = 159
Score = 58.0 bits (29), Expect = 3e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 80 gaatcgatcgataaacctctgcatccagt 108
|||||||||||||||||||||||||||||
Sbjct: 131 gaatcgatcgataaacctctgcatccagt 159
>RF00742;MIR162_2;ABXC01002838.1/886-1017 4558:Sorghum bicolor
(sorghum)
Length = 132
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 80 gaatcgatcgataaacctctgcatccag 107
||||||||||||||||||||||||||||
Sbjct: 104 gaatcgatcgataaacctctgcatccag 131
>RF00742;MIR162_2;AARH01005287.1/78295-78385 3694:Populus
trichocarpa
Length = 91
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 77 catgaatcgatcgataaacctctgcatccag 107
|||||| ||||||||||||||||||||||||
Sbjct: 60 catgaaccgatcgataaacctctgcatccag 90
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 ctggaggcagcggttcatcgatc 33
|||||||||||||||||||||||
Sbjct: 3 ctggaggcagcggttcatcgatc 25
>RF00742;MIR162_2;AC162031.12/99168-99079 3880:Medicago truncatula
(barrel medic)
Length = 90
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 77 catgaatcgatcgataaacctctgcatccag 107
||||||||| |||||||||||||||||||||
Sbjct: 59 catgaatcggtcgataaacctctgcatccag 89
>RF00742;MIR162_2;AY728420.1/1-91 3694:Populus trichocarpa
Length = 91
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 84 cgatcgataaacctctgcatccagt 108
|||||||||||||||||||||||||
Sbjct: 67 cgatcgataaacctctgcatccagt 91
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 ctggaggcagcggttcatcgatc 33
|||||||||||||||||||||||
Sbjct: 3 ctggaggcagcggttcatcgatc 25
>RF00742;MIR162_2;AM451502.1/2540-2627 29760:Vitis vinifera
Length = 88
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 80 gaatcgatcgataaacctctgcatccag 107
|||||| |||||||||||||||||||||
Sbjct: 60 gaatcggtcgataaacctctgcatccag 87
>RF00742;MIR162_2;BT061256.1/316-448 4577:Zea mays
Length = 133
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 80 gaatcgatcgataaacctctgcatccag 107
|||||| |||||||||||||||||||||
Sbjct: 105 gaatcggtcgataaacctctgcatccag 132
>RF00742;MIR162_2;AACV01010015.1/69608-69724 39947:Oryza sativa
Japonica Group
Length = 117
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 80 gaatcgatcgataaacctctgcatccag 107
|||||||||||||| |||||||||||||
Sbjct: 89 gaatcgatcgataagcctctgcatccag 116
>RF00742;MIR162_2;AC189332.2/56556-56647 51351:Brassica rapa subsp.
pekinensis
Length = 92
Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 74 aagcatgaatcgatcgataaacctctgcatccag 107
||||||||| ||||||||||||| |||||||||
Sbjct: 58 aagcatgaacagatcgataaacctgtgcatccag 91
