miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;DQ885765.1/4441-4533 4565:Triticum aestivum (bread
wheat)
Length = 93
Score = 101 bits (51), Expect = 2e-21
Identities = 75/83 (90%)
Strand = Plus / Plus
Query: 23 ctccctccgtaaaagaatataagagcatttagatcactactatagtgatctaaacactct 82
||||||| ||||| |||||||||||||| ||||||||||| |||||||||||| ||||
Sbjct: 7 ctccctctgtaaactaatataagagcattcagatcactactttagtgatctaaatgctct 66
Query: 83 tatatttctttacagagggagta 105
||||||||||||| |||||||||
Sbjct: 67 tatatttctttacggagggagta 89
Score = 85.7 bits (43), Expect = 1e-16
Identities = 73/83 (87%)
Strand = Plus / Minus
Query: 23 ctccctccgtaaaagaatataagagcatttagatcactactatagtgatctaaacactct 82
||||||||||||| |||||||||||||||||||||||| ||||||||| || ||||
Sbjct: 87 ctccctccgtaaagaaatataagagcatttagatcactaaagtagtgatctgaatgctct 28
Query: 83 tatatttctttacagagggagta 105
|||||| |||||||||||||||
Sbjct: 27 tatattagtttacagagggagta 5
>RF00906;MIR1122;EU660903.1/5594-5502 4565:Triticum aestivum (bread
wheat)
Length = 93
Score = 97.6 bits (49), Expect = 3e-20
Identities = 64/69 (92%)
Strand = Plus / Minus
Query: 38 aatataagagcatttagatcactactatagtgatctaaacactcttatatttctttacag 97
||||||||||||||||||| |||||| ||||| ||||||| ||||||||||||||||| |
Sbjct: 72 aatataagagcatttagataactactttagtgctctaaacgctcttatatttctttaccg 13
Query: 98 agggagtac 106
|||||||||
Sbjct: 12 agggagtac 4
Score = 71.9 bits (36), Expect = 2e-12
Identities = 72/84 (85%)
Strand = Plus / Plus
Query: 23 ctccctccgtaaaagaatataagagcatttagatcactactatagtgatctaaacactct 82
||||||| ||||| ||||||||||| |||||| ||||| |||| ||||||| ||||
Sbjct: 7 ctccctcggtaaagaaatataagagcgtttagagcactaaagtagttatctaaatgctct 66
Query: 83 tatatttctttacagagggagtac 106
|||||||||||| |||||||||||
Sbjct: 67 tatatttctttatagagggagtac 90
>RF00906;MIR1122;DQ995513.1/14600-14508 4513:Hordeum vulgare
Length = 93
Score = 97.6 bits (49), Expect = 3e-20
Identities = 73/81 (90%)
Strand = Plus / Minus
Query: 25 ccctccgtaaaagaatataagagcatttagatcactactatagtgatctaaacactctta 84
||||| ||||| ||||||||||| |||||||||||||| |||||||||||| ||||||
Sbjct: 85 ccctctgtaaagaaatataagagcgtttagatcactacttcagtgatctaaacgctctta 26
Query: 85 tatttctttacagagggagta 105
|||||||||||||||| ||||
Sbjct: 25 tatttctttacagaggtagta 5
Score = 79.8 bits (40), Expect = 8e-15
Identities = 58/64 (90%)
Strand = Plus / Plus
Query: 38 aatataagagcatttagatcactactatagtgatctaaacactcttatatttctttacag 97
||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct: 22 aatataagagcgtttagatcactgaagtagtgatctaaacgctcttatatttctttacag 81
Query: 98 aggg 101
||||
Sbjct: 82 aggg 85
>RF00906;MIR1122;EU660896.1/71755-71663 4572:Triticum urartu
Length = 93
Score = 95.6 bits (48), Expect = 1e-19
Identities = 75/84 (89%)
Strand = Plus / Minus
Query: 23 ctccctccgtaaaagaatataagagcatttagatcactactatagtgatctaaacactct 82
||||||||||||| ||||||||||| |||||| ||||| | ||||||||||||||||||
Sbjct: 87 ctccctccgtaaactaatataagagcgtttagaacactattttagtgatctaaacactct 28
Query: 83 tatatttctttacagagggagtac 106
|||||| |||| |||||||||||
Sbjct: 27 tatattggtttatagagggagtac 4
Score = 63.9 bits (32), Expect = 5e-10
Identities = 59/68 (86%)
Strand = Plus / Plus
Query: 38 aatataagagcatttagatcactactatagtgatctaaacactcttatatttctttacag 97
|||||||||| |||||||||||| |||||| ||||||| |||||||||| ||||| |
Sbjct: 22 aatataagagtgtttagatcactaaaatagtgttctaaacgctcttatattagtttacgg 81
Query: 98 agggagta 105
||||||||
Sbjct: 82 agggagta 89
>RF00906;MIR1122;X83518.1/7623-7532 4513:Hordeum vulgare
Length = 92
Score = 95.6 bits (48), Expect = 1e-19
Identities = 63/68 (92%)
Strand = Plus / Minus
Query: 38 aatataagagcatttagatcactactatagtgatctaaacactcttatatttctttacag 97
||||||||||| |||||||||||||| ||||||||||||| |||||||||| |||||||
Sbjct: 72 aatataagagcgtttagatcactactttagtgatctaaacgctcttatattagtttacag 13
Query: 98 agggagta 105
||||||||
Sbjct: 12 agggagta 5
Score = 67.9 bits (34), Expect = 3e-11
Identities = 58/66 (87%)
Strand = Plus / Plus
Query: 23 ctccctccgtaaaagaatataagagcatttagatcactactatagtgatctaaacactct 82
||||||| ||||| ||||||||||| |||||||||||| ||||||||||||| ||||
Sbjct: 7 ctccctctgtaaactaatataagagcgtttagatcactaaagtagtgatctaaacgctct 66
Query: 83 tatatt 88
||||||
Sbjct: 67 tatatt 72
>RF00906;MIR1122;FM164415.1/12272-12364 4513:Hordeum vulgare
Length = 93
Score = 95.6 bits (48), Expect = 1e-19
Identities = 75/84 (89%)
Strand = Plus / Minus
Query: 23 ctccctccgtaaaagaatataagagcatttagatcactactatagtgatctaaacactct 82
||||||||||||| |||||||||| ||||||| |||||| |||||||||| || ||||
Sbjct: 87 ctccctccgtaaagaaatataagagtgtttagataactactttagtgatctagacgctct 28
Query: 83 tatatttctttacagagggagtac 106
|||||||||||||||| |||||||
Sbjct: 27 tatatttctttacagaaggagtac 4
Score = 79.8 bits (40), Expect = 8e-15
Identities = 61/68 (89%)
Strand = Plus / Plus
Query: 38 aatataagagcatttagatcactactatagtgatctaaacactcttatatttctttacag 97
||||||||||| | |||||||||| |||| |||||||||||||||||||||||||| |
Sbjct: 22 aatataagagcgtctagatcactaaagtagttatctaaacactcttatatttctttacgg 81
Query: 98 agggagta 105
||||||||
Sbjct: 82 agggagta 89
>RF00906;MIR1122;X65606.1/2347-2255 4513:Hordeum vulgare
Length = 93
Score = 95.6 bits (48), Expect = 1e-19
Identities = 75/84 (89%)
Strand = Plus / Minus
Query: 23 ctccctccgtaaaagaatataagagcatttagatcactactatagtgatctaaacactct 82
||||||| ||||| ||||||||| ||||||||| |||||| |||||||||||||| |||
Sbjct: 87 ctccctctgtaaagaaatataagatcatttagataactactttagtgatctaaacattct 28
Query: 83 tatatttctttacagagggagtac 106
||||||||| ||| ||||||||||
Sbjct: 27 tatatttctgtacggagggagtac 4
Score = 61.9 bits (31), Expect = 2e-09
Identities = 70/83 (84%)
Strand = Plus / Plus
Query: 23 ctccctccgtaaaagaatataagagcatttagatcactactatagtgatctaaacactct 82
||||||||||| | ||||||||| |||||||||||| |||| ||||||| |||
Sbjct: 7 ctccctccgtacagaaatataagaatgtttagatcactaaagtagttatctaaatgatct 66
Query: 83 tatatttctttacagagggagta 105
|||||||||||||||||||||||
Sbjct: 67 tatatttctttacagagggagta 89
>RF00906;MIR1122;EU183492.1/3479-3389 37682:Aegilops tauschii
Length = 91
Score = 89.7 bits (45), Expect = 8e-18
Identities = 54/57 (94%)
Strand = Plus / Plus
Query: 50 tttagatcactactatagtgatctaaacactcttatatttctttacagagggagtac 106
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32 tttagatcactaaagtagtgatctaaacactcttatatttctttacagagggagtac 88
Score = 73.8 bits (37), Expect = 5e-13
Identities = 73/84 (86%), Gaps = 2/84 (2%)
Strand = Plus / Minus
Query: 23 ctccctccgtaaaagaatataagagcatttagatcactactatagtgatctaaacactct 82
||||||| ||||| |||||||||| |||||||||||||| |||||||||||||| ||
Sbjct: 85 ctccctctgtaaagaaatataagagtgtttagatcactactttagtgatctaaaca--ct 28
Query: 83 tatatttctttacagagggagtac 106
|| |||| ||||| ||||||||||
Sbjct: 27 tacatttatttacggagggagtac 4
>RF00906;MIR1122;AY368673.1/832-740 4571:Triticum turgidum
Length = 93
Score = 87.7 bits (44), Expect = 3e-17
Identities = 74/84 (88%)
Strand = Plus / Minus
Query: 23 ctccctccgtaaaagaatataagagcatttagatcactactatagtgatctaaacactct 82
||||||| ||||| ||||||||||| |||||||||||| ||||||||| |||||||||
Sbjct: 87 ctccctcagtaaactaatataagagcgtttagatcactaaaatagtgatcaaaacactct 28
Query: 83 tatatttctttacagagggagtac 106
|||||| ||||| ||||||||||
Sbjct: 27 tatattaatttacggagggagtac 4
Score = 75.8 bits (38), Expect = 1e-13
Identities = 71/82 (86%)
Strand = Plus / Plus
Query: 23 ctccctccgtaaaagaatataagagcatttagatcactactatagtgatctaaacactct 82
||||||||||||| |||||||||| ||| |||||||| | ||||||||||||| ||||
Sbjct: 7 ctccctccgtaaattaatataagagtgttttgatcactattttagtgatctaaacgctct 66
Query: 83 tatatttctttacagagggagt 104
|||||| ||||| ||||||||
Sbjct: 67 tatattagtttactgagggagt 88
>RF00906;MIR1122;AJ507214.1/4285-4377 4513:Hordeum vulgare
Length = 93
Score = 87.7 bits (44), Expect = 3e-17
Identities = 53/56 (94%)
Strand = Plus / Plus
Query: 38 aatataagagcatttagatcactactatagtgatctaaacactcttatatttcttt 93
||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||
Sbjct: 22 aatataagagcgtttagatcactactttagtgatctagacactcttatatttcttt 77
Score = 60.0 bits (30), Expect = 7e-09
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 38 aatataagagcatttagatcactactatagtgatctaaacactcttatatttctttacag 97
|||||||||| | |||||||||| ||||||||||||| ||||||||||| |||||||
Sbjct: 72 aatataagagtgtctagatcactaaagtagtgatctaaacgctcttatatttgtttacag 13
Query: 98 ag 99
||
Sbjct: 12 ag 11
>RF00906;MIR1122;FJ711024.1/1206-1298 37717:Agropyron mongolicum
Length = 93
Score = 87.7 bits (44), Expect = 3e-17
Identities = 71/80 (88%)
Strand = Plus / Minus
Query: 26 cctccgtaaaagaatataagagcatttagatcactactatagtgatctaaacactcttat 85
|||||||||| ||||||||||| |||||||||||| | |||||||| |||| |||||||
Sbjct: 84 cctccgtaaactaatataagagcgtttagatcactattttagtgatccaaacgctcttat 25
Query: 86 atttctttacagagggagta 105
||| |||||||||||||||
Sbjct: 24 attaatttacagagggagta 5
Score = 67.9 bits (34), Expect = 3e-11
Identities = 58/66 (87%)
Strand = Plus / Plus
Query: 23 ctccctccgtaaaagaatataagagcatttagatcactactatagtgatctaaacactct 82
||||||| ||||| ||||||||||| ||| |||||||| |||||||||||||| ||||
Sbjct: 7 ctccctctgtaaattaatataagagcgtttggatcactaaaatagtgatctaaacgctct 66
Query: 83 tatatt 88
||||||
Sbjct: 67 tatatt 72
>RF00906;MIR1122;AJ302096.1/1385-1477 4573:Aegilops speltoides
Length = 93
Score = 87.7 bits (44), Expect = 3e-17
Identities = 74/84 (88%)
Strand = Plus / Minus
Query: 23 ctccctccgtaaaagaatataagagcatttagatcactactatagtgatctaaacactct 82
||||||||||||| ||||||||||| |||||| |||| |||||||||||||| ||||
Sbjct: 87 ctccctccgtaaactaatataagagcgtttagaatactaaaatagtgatctaaacgctct 28
Query: 83 tatatttctttacagagggagtac 106
|||||| ||||||||||||||||
Sbjct: 27 tatattagtttacagagggagtac 4
Score = 69.9 bits (35), Expect = 8e-12
Identities = 71/83 (85%)
Strand = Plus / Plus
Query: 23 ctccctccgtaaaagaatataagagcatttagatcactactatagtgatctaaacactct 82
||||||| ||||| ||||||||||| |||||||||||| | |||| ||||||| ||||
Sbjct: 7 ctccctctgtaaactaatataagagcgtttagatcactattttagtattctaaacgctct 66
Query: 83 tatatttctttacagagggagta 105
|||||| ||||| |||||||||
Sbjct: 67 tatattagtttacggagggagta 89
>RF00906;MIR1122;AM932685.1/163196-163288 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 85.7 bits (43), Expect = 1e-16
Identities = 73/83 (87%)
Strand = Plus / Plus
Query: 23 ctccctccgtaaaagaatataagagcatttagatcactactatagtgatctaaacactct 82
||||||| ||||| ||||||||||| ||||||||||||| ||||||||||| | ||||
Sbjct: 7 ctccctctgtaaactaatataagagcgcttagatcactactttagtgatctaagcgctct 66
Query: 83 tatatttctttacagagggagta 105
|||||| |||||||||||||||
Sbjct: 67 tatattagtttacagagggagta 89
Score = 69.9 bits (35), Expect = 8e-12
Identities = 71/83 (85%)
Strand = Plus / Minus
Query: 23 ctccctccgtaaaagaatataagagcatttagatcactactatagtgatctaaacactct 82
||||||| ||||| ||||||||||| ||||||||||| ||||||||||| | ||||
Sbjct: 87 ctccctctgtaaactaatataagagcgcttagatcactaaagtagtgatctaagcgctct 28
Query: 83 tatatttctttacagagggagta 105
|||||| |||||||||||||||
Sbjct: 27 tatattagtttacagagggagta 5
>RF00906;MIR1122;AB178167.1/826-734 4565:Triticum aestivum (bread
wheat)
Length = 93
Score = 85.7 bits (43), Expect = 1e-16
Identities = 73/83 (87%)
Strand = Plus / Minus
Query: 23 ctccctccgtaaaagaatataagagcatttagatcactactatagtgatctaaacactct 82
||||||| ||||| |||||||||||||||| |||| || |||||||||||||||||||
Sbjct: 87 ctccctcggtaaactaatataagagcatttaaatcattaaaatagtgatctaaacactct 28
Query: 83 tatatttctttacagagggagta 105
|||||| ||||| |||||||||
Sbjct: 27 tatattagtttacggagggagta 5
Score = 61.9 bits (31), Expect = 2e-09
Identities = 70/83 (84%)
Strand = Plus / Plus
Query: 23 ctccctccgtaaaagaatataagagcatttagatcactactatagtgatctaaacactct 82
||||||||||||| |||||||||| |||||||||||| | || |||| |||| ||||
Sbjct: 7 ctccctccgtaaactaatataagagtgtttagatcactattttaatgatttaaatgctct 66
Query: 83 tatatttctttacagagggagta 105
|||||| ||||| |||||||||
Sbjct: 67 tatattagtttaccgagggagta 89
>RF00906;MIR1122;AJ400713.1/2799-2707 4565:Triticum aestivum (bread
wheat)
Length = 93
Score = 85.7 bits (43), Expect = 1e-16
Identities = 73/83 (87%)
Strand = Plus / Minus
Query: 23 ctccctccgtaaaagaatataagagcatttagatcactactatagtgatctaaacactct 82
||||||||||||| ||||||||||| ||||||| |||| | |||||||||||| ||||
Sbjct: 87 ctccctccgtaaactaatataagagcgtttagattactattttagtgatctaaatgctct 28
Query: 83 tatatttctttacagagggagta 105
|||||| |||||||||||||||
Sbjct: 27 tatattagtttacagagggagta 5
Score = 85.7 bits (43), Expect = 1e-16
Identities = 73/83 (87%)
Strand = Plus / Plus
Query: 23 ctccctccgtaaaagaatataagagcatttagatcactactatagtgatctaaacactct 82
||||||| ||||| |||||||||||||||||||||||| ||||| |||||||| ||||
Sbjct: 7 ctccctctgtaaactaatataagagcatttagatcactaaaatagtaatctaaacgctct 66
Query: 83 tatatttctttacagagggagta 105
|||||| ||||| |||||||||
Sbjct: 67 tatattagtttacggagggagta 89
>RF00906;MIR1122;EF067844.1/459123-459031 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 93
Score = 85.7 bits (43), Expect = 1e-16
Identities = 73/83 (87%)
Strand = Plus / Minus
Query: 24 tccctccgtaaaagaatataagagcatttagatcactactatagtgatctaaacactctt 83
||||| |||||| |||||||||||||||||| ||||| | |||| ||||||| ||||||
Sbjct: 86 tcccttcgtaaactaatataagagcatttagaacactattttagtaatctaaatactctt 27
Query: 84 atatttctttacagagggagtac 106
||||| ||||||||||||||||
Sbjct: 26 atattagtttacagagggagtac 4
>RF00906;MIR1122;EU200767.1/3655-3563 37682:Aegilops tauschii
Length = 93
Score = 85.7 bits (43), Expect = 1e-16
Identities = 73/83 (87%)
Strand = Plus / Minus
Query: 24 tccctccgtaaaagaatataagagcatttagatcactactatagtgatctaaacactctt 83
|||||| ||||| ||||||||||| |||||||||||| | ||| ||||||||| | |||
Sbjct: 86 tccctcagtaaagaaatataagagcgtttagatcactattttagagatctaaacgccctt 27
Query: 84 atatttctttacagagggagtac 106
|||||| ||||||||||||||||
Sbjct: 26 atatttgtttacagagggagtac 4
Score = 79.8 bits (40), Expect = 8e-15
Identities = 70/80 (87%)
Strand = Plus / Plus
Query: 23 ctccctccgtaaaagaatataagagcatttagatcactactatagtgatctaaacactct 82
||||||| ||||| |||||||| || |||||||| ||| |||||||||||||| ||||
Sbjct: 7 ctccctctgtaaacaaatataagggcgtttagatctctaaaatagtgatctaaacgctct 66
Query: 83 tatatttctttacagaggga 102
||||||||||||| ||||||
Sbjct: 67 tatatttctttactgaggga 86
>RF00906;MIR1122;AY133248.1/2807-2899 37682:Aegilops tauschii
Length = 93
Score = 85.7 bits (43), Expect = 1e-16
Identities = 73/83 (87%)
Strand = Plus / Plus
Query: 23 ctccctccgtaaaagaatataagagcatttagatcactactatagtgatctaaacactct 82
||||||||||||| ||||||||||| ||||||| |||||| ||||||||||||| ||||
Sbjct: 7 ctccctccgtaaattaatataagagcgtttagattactactttagtgatctaaacgctct 66
Query: 83 tatatttctttacagagggagta 105
|||| | |||||||| ||||||
Sbjct: 67 tatagtagtttacagacggagta 89
Score = 60.0 bits (30), Expect = 7e-09
Identities = 57/66 (86%)
Strand = Plus / Minus
Query: 40 tataagagcatttagatcactactatagtgatctaaacactcttatatttctttacagag 99
||||||||| |||||||||||| |||| |||||||| |||||||||| ||||| |||
Sbjct: 70 tataagagcgtttagatcactaaagtagtaatctaaacgctcttatattaatttacggag 11
Query: 100 ggagta 105
||||||
Sbjct: 10 ggagta 5
>RF00906;MIR1122;EU282676.1/869-732 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 138
Score = 83.8 bits (42), Expect = 5e-16
Identities = 60/66 (90%)
Strand = Plus / Minus
Query: 23 ctccctccgtaaaagaatataagagcatttagatcactactatagtgatctaaacactct 82
||||||||||||| ||||||||||||||||||||| || |||||||||||||| ||||
Sbjct: 132 ctccctccgtaaactaatataagagcatttagatcattaaaatagtgatctaaacgctct 73
Query: 83 tatatt 88
||||||
Sbjct: 72 tatatt 67
Score = 63.9 bits (32), Expect = 5e-10
Identities = 59/68 (86%)
Strand = Plus / Plus
Query: 38 aatataagagcatttagatcactactatagtgatctaaacactcttatatttctttacag 97
||||||||||| |||||||||||| | || ||||||||| |||||||||| ||||| |
Sbjct: 67 aatataagagcgtttagatcactattttaatgatctaaatgctcttatattagtttacgg 126
Query: 98 agggagta 105
||||||||
Sbjct: 127 agggagta 134
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 72 ctaaacactcttatatttctttacagagggagtac 106
|||||| |||||||||| ||||||||||||||||
Sbjct: 38 ctaaacgctcttatattagtttacagagggagtac 4
>RF00906;MIR1122;EU282299.1/528-618 97361:Hordeum murinum
Length = 91
Score = 83.8 bits (42), Expect = 5e-16
Identities = 70/78 (89%), Gaps = 1/78 (1%)
Strand = Plus / Minus
Query: 23 ctccctccgtaaaagaatataagagcatttagatcactactatagtgatctaaacactct 82
||||||||||||| |||||||||||||||||||||||||| |||||||||||| || |
Sbjct: 85 ctccctccgtaaactaatataagagcatttagatcactact-tagtgatctaaatgcttt 27
Query: 83 tatatttctttacagagg 100
|||||| ||||||||||
Sbjct: 26 tatattagtttacagagg 9
Score = 56.0 bits (28), Expect = 1e-07
Identities = 59/68 (86%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 38 aatataagagcatttagatcactactatagtgatctaaacactcttatatttctttacag 97
||||||| |||||||||||||||| |||||||||||| |||||||||| ||||| |
Sbjct: 21 aatataaaagcatttagatcactaag-tagtgatctaaatgctcttatattagtttacgg 79
Query: 98 agggagta 105
||||||||
Sbjct: 80 agggagta 87
>RF00906;MIR1122;AM932680.1/146155-146063 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 81.8 bits (41), Expect = 2e-15
Identities = 62/69 (89%)
Strand = Plus / Minus
Query: 38 aatataagagcatttagatcactactatagtgatctaaacactcttatatttctttacag 97
|||||||||||||||||||||||| | |||||| |||||| |||||||||| ||||| |
Sbjct: 72 aatataagagcatttagatcactattttagtgacctaaacgctcttatattagtttacgg 13
Query: 98 agggagtac 106
|||||||||
Sbjct: 12 agggagtac 4
Score = 77.8 bits (39), Expect = 3e-14
Identities = 72/83 (86%)
Strand = Plus / Plus
Query: 23 ctccctccgtaaaagaatataagagcatttagatcactactatagtgatctaaacactct 82
||||||||||||| ||||||||||| ||||| |||||| ||||||||||||| ||||
Sbjct: 7 ctccctccgtaaactaatataagagcgtttaggtcactaaaatagtgatctaaatgctct 66
Query: 83 tatatttctttacagagggagta 105
|||||| |||||||||| ||||
Sbjct: 67 tatattagtttacagaggaagta 89
>RF00906;MIR1122;AF277253.1/801-887 58935:Australopyrum velutinum
Length = 87
Score = 81.8 bits (41), Expect = 2e-15
Identities = 73/84 (86%), Gaps = 6/84 (7%)
Strand = Plus / Plus
Query: 23 ctccctccgtaaaagaatataagagcatttagatcactactatagtgatctaaacactct 82
||||||| ||||| ||||||||||| ||||||||| ||||||||||||| ||||
Sbjct: 7 ctccctctgtaaagaaatataagagcgtttagatca------tagtgatctaaacgctct 60
Query: 83 tatatttctttacagagggagtac 106
||||||||||||||||||||||||
Sbjct: 61 tatatttctttacagagggagtac 84
Score = 79.8 bits (40), Expect = 8e-15
Identities = 72/83 (86%), Gaps = 6/83 (7%)
Strand = Plus / Minus
Query: 23 ctccctccgtaaaagaatataagagcatttagatcactactatagtgatctaaacactct 82
||||||| ||||| ||||||||||| |||||||||||| |||||||||| ||||
Sbjct: 81 ctccctctgtaaagaaatataagagcgtttagatcacta------tgatctaaacgctct 28
Query: 83 tatatttctttacagagggagta 105
|||||||||||||||||||||||
Sbjct: 27 tatatttctttacagagggagta 5
>RF00906;MIR1122;AM000057.1/1342-1250 4513:Hordeum vulgare
Length = 93
Score = 79.8 bits (40), Expect = 8e-15
Identities = 61/68 (89%)
Strand = Plus / Minus
Query: 38 aatataagagcatttagatcactactatagtgatctaaacactcttatatttctttacag 97
||||||| |||||||||| ||||||| |||| |||||||| |||||||||| |||||||
Sbjct: 72 aatataaaagcatttagaacactactttagtaatctaaacgctcttatattagtttacag 13
Query: 98 agggagta 105
||||||||
Sbjct: 12 agggagta 5
Score = 48.1 bits (24), Expect = 3e-05
Identities = 69/84 (82%)
Strand = Plus / Plus
Query: 23 ctccctccgtaaaagaatataagagcatttagatcactactatagtgatctaaacactct 82
||||||| ||||| ||||||||||| ||||||| |||| ||||| |||||| || |
Sbjct: 7 ctccctctgtaaactaatataagagcgtttagattactaaagtagtgttctaaatgcttt 66
Query: 83 tatatttctttacagagggagtac 106
|||||| ||||||| ||||||||
Sbjct: 67 tatattagtttacagggggagtac 90
>RF00906;MIR1122;DQ537336.1/26726-26824 4565:Triticum aestivum
(bread wheat)
Length = 99
Score = 77.8 bits (39), Expect = 3e-14
Identities = 65/74 (87%), Gaps = 6/74 (8%)
Strand = Plus / Minus
Query: 38 aatataagagcatttagatcactacta------tagtgatctaaacactcttatatttct 91
||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct: 78 aatataagatcatttagatcactactactattttagtgatctaaacgatcttatatttct 19
Query: 92 ttacagagggagta 105
||||||||||||||
Sbjct: 18 ttacagagggagta 5
>RF00906;MIR1122;AY747601.1/4943-5034 4565:Triticum aestivum
(bread wheat)
Length = 92
Score = 73.8 bits (37), Expect = 5e-13
Identities = 64/73 (87%)
Strand = Plus / Plus
Query: 23 ctccctccgtaaaagaatataagagcatttagatcactactatagtgatctaaacactct 82
||||||||||||| ||||||||||| ||||| |||||||| |||||||| ||| ||||
Sbjct: 7 ctccctccgtaaagaaatataagagcgtttaggtcactacttgagtgatctgaacgctct 66
Query: 83 tatatttctttac 95
||||||| |||||
Sbjct: 67 tatatttgtttac 79
Score = 63.9 bits (32), Expect = 5e-10
Identities = 59/68 (86%)
Strand = Plus / Minus
Query: 38 aatataagagcatttagatcactactatagtgatctaaacactcttatatttctttacag 97
||||||||||| || |||||||| |||||| |||||| ||||||||||||||||| |
Sbjct: 72 aatataagagcgttcagatcactcaagtagtgacctaaacgctcttatatttctttacgg 13
Query: 98 agggagta 105
||||||||
Sbjct: 12 agggagta 5
>RF00906;MIR1122;FJ436985.1/28643-28733 4565:Triticum aestivum
(bread wheat)
Length = 91
Score = 73.8 bits (37), Expect = 5e-13
Identities = 73/84 (86%), Gaps = 2/84 (2%)
Strand = Plus / Minus
Query: 23 ctccctccgtaaaagaatataagagcatttagatcactactatagtgatctaaacactct 82
||||||||||||| ||||||| ||| |||||| |||| | |||| |||||||||||||
Sbjct: 85 ctccctccgtaaactaatataatagcgtttaga--actattttagttatctaaacactct 28
Query: 83 tatatttctttacagagggagtac 106
|||||| ||||||||||||||||
Sbjct: 27 tatattagtttacagagggagtac 4
>RF00906;MIR1122;DQ295068.1/1030-931 4550:Secale cereale (rye)
Length = 100
Score = 73.8 bits (37), Expect = 5e-13
Identities = 52/57 (91%)
Strand = Plus / Minus
Query: 50 tttagatcactactatagtgatctaaacactcttatatttctttacagagggagtac 106
|||||||||||||| |||||||||||| |||||||||| ||||||||||||||||
Sbjct: 60 tttagatcactactttagtgatctaaaagctcttatattagtttacagagggagtac 4
Score = 52.0 bits (26), Expect = 2e-06
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 23 ctccctccgtaaaagaatataagagcatttagatcactactatagtgatctaaa 76
||||||| ||||| ||||||||||| |||||||||||| ||||||||||||
Sbjct: 7 ctccctctgtaaactaatataagagcttttagatcactaaagtagtgatctaaa 60
>RF00906;MIR1122;FJ436986.1/53497-53587 37682:Aegilops tauschii
Length = 91
Score = 73.8 bits (37), Expect = 5e-13
Identities = 73/84 (86%), Gaps = 2/84 (2%)
Strand = Plus / Minus
Query: 23 ctccctccgtaaaagaatataagagcatttagatcactactatagtgatctaaacactct 82
||||||||||||| ||||||||||| |||||| |||| | |||| ||||||||||| |
Sbjct: 85 ctccctccgtaaactaatataagagcgtttaga--actattttagttatctaaacacttt 28
Query: 83 tatatttctttacagagggagtac 106
|||||| ||||||||||||||||
Sbjct: 27 tatattagtttacagagggagtac 4
>RF00906;MIR1122;EF540321.1/152068-151976 4571:Triticum turgidum
Length = 93
Score = 71.9 bits (36), Expect = 2e-12
Identities = 72/84 (85%)
Strand = Plus / Plus
Query: 23 ctccctccgtaaaagaatataagagcatttagatcactactatagtgatctaaacactct 82
||||||||||||| |||||||||| ||||||| |||||| |||||||||||| | |
Sbjct: 7 ctccctccgtaaactaatataagagtgtttagattactactttagtgatctaaatgtttt 66
Query: 83 tatatttctttacagagggagtac 106
|||||| ||||||||||||||||
Sbjct: 67 tatattagtttacagagggagtac 90
Score = 69.9 bits (35), Expect = 8e-12
Identities = 71/83 (85%)
Strand = Plus / Minus
Query: 23 ctccctccgtaaaagaatataagagcatttagatcactactatagtgatctaaacactct 82
||||||| ||||| ||||||| | |||||||||||||| |||| |||||||||||||
Sbjct: 87 ctccctctgtaaactaatataaaaacatttagatcactaaagtagtaatctaaacactct 28
Query: 83 tatatttctttacagagggagta 105
|||||| ||||| |||||||||
Sbjct: 27 tatattagtttacggagggagta 5
>RF00906;MIR1122;AF458279.1/188-280 4568:Triticum monococcum
Length = 93
Score = 71.9 bits (36), Expect = 2e-12
Identities = 69/80 (86%)
Strand = Plus / Minus
Query: 23 ctccctccgtaaaagaatataagagcatttagatcactactatagtgatctaaacactct 82
||||||| ||||| ||||||||| | |||||||||||||| |||||||||||| |||
Sbjct: 87 ctccctctgtaaactaatataagaccttttagatcactactttagtgatctaaaaggtct 28
Query: 83 tatatttctttacagaggga 102
|||||| ||||||||||||
Sbjct: 27 tatattagtttacagaggga 8
Score = 61.9 bits (31), Expect = 2e-09
Identities = 70/83 (84%)
Strand = Plus / Plus
Query: 24 tccctccgtaaaagaatataagagcatttagatcactactatagtgatctaaacactctt 83
|||||| ||||| ||||||||| | |||||||||||| |||||||||||| ||||
Sbjct: 8 tccctctgtaaactaatataagaccttttagatcactaaagtagtgatctaaaaggtctt 67
Query: 84 atatttctttacagagggagtac 106
||||| ||||||||||||||||
Sbjct: 68 atattagtttacagagggagtac 90
>RF00906;MIR1122;AB298185.1/20826-20734 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 69.9 bits (35), Expect = 8e-12
Identities = 71/83 (85%)
Strand = Plus / Plus
Query: 23 ctccctccgtaaaagaatataagagcatttagatcactactatagtgatctaaacactct 82
||||||||||||| ||||||| ||| |||||| |||| |||||||||||||| |||
Sbjct: 7 ctccctccgtaaactaatataaaagcgtttagaatactaaaatagtgatctaaacgttct 66
Query: 83 tatatttctttacagagggagta 105
|||||| |||||||||||||||
Sbjct: 67 tatattagtttacagagggagta 89
Score = 56.0 bits (28), Expect = 1e-07
Identities = 70/84 (83%)
Strand = Plus / Minus
Query: 23 ctccctccgtaaaagaatataagagcatttagatcactactatagtgatctaaacactct 82
||||||| ||||| ||||||||| | |||||||||||| | |||| ||||||| || |
Sbjct: 87 ctccctctgtaaactaatataagaacgtttagatcactattttagtattctaaacgcttt 28
Query: 83 tatatttctttacagagggagtac 106
|||||| ||||| ||||||||||
Sbjct: 27 tatattagtttacggagggagtac 4
>RF00906;MIR1122;AY853252.1/53493-53585 4513:Hordeum vulgare
Length = 93
Score = 69.9 bits (35), Expect = 8e-12
Identities = 71/83 (85%)
Strand = Plus / Minus
Query: 23 ctccctccgtaaaagaatataagagcatttagatcactactatagtgatctaaacactct 82
|||||||| |||| ||||||||||||||||||| | || ||||||||||||| || |
Sbjct: 87 ctccctccataaactaatataagagcatttagattattaaaatagtgatctaaatgcttt 28
Query: 83 tatatttctttacagagggagta 105
|||||| |||||||||||||||
Sbjct: 27 tatattagtttacagagggagta 5
Score = 56.0 bits (28), Expect = 1e-07
Identities = 70/84 (83%)
Strand = Plus / Plus
Query: 23 ctccctccgtaaaagaatataagagcatttagatcactactatagtgatctaaacactct 82
||||||| ||||| ||||||| |||||||||||||||| | || | ||||||| ||||
Sbjct: 7 ctccctctgtaaactaatataaaagcatttagatcactattttaataatctaaatgctct 66
Query: 83 tatatttctttacagagggagtac 106
|||||| |||| ||||||||||
Sbjct: 67 tatattagtttatggagggagtac 90
>RF00906;MIR1122;EU835198.1/56667-56575 85692:Triticum turgidum
subsp. dicoccoides
Length = 93
Score = 67.9 bits (34), Expect = 3e-11
Identities = 40/42 (95%)
Strand = Plus / Minus
Query: 65 tagtgatctaaacactcttatatttctttacagagggagtac 106
|||||||||||||||||||||||| ||||||||||||||||
Sbjct: 45 tagtgatctaaacactcttatattagtttacagagggagtac 4
Score = 61.9 bits (31), Expect = 2e-09
Identities = 70/83 (84%)
Strand = Plus / Plus
Query: 23 ctccctccgtaaaagaatataagagcatttagatcactactatagtgatctaaacactct 82
||||||| ||||| |||||||||| |||||||||||| | |||| || |||| ||| |
Sbjct: 7 ctccctctgtaaactaatataagagtgtttagatcactagtttagtaatttaaaaacttt 66
Query: 83 tatatttctttacagagggagta 105
|||||| |||||||||||||||
Sbjct: 67 tatattagtttacagagggagta 89
>RF00906;MIR1122;EU282300.1/610-519 97361:Hordeum murinum
Length = 92
Score = 67.9 bits (34), Expect = 3e-11
Identities = 59/66 (89%), Gaps = 1/66 (1%)
Strand = Plus / Minus
Query: 23 ctccctccgtaaaagaatataagagcatttagatcactactatagtgatctaaacactct 82
||||||| ||||| |||||||||||||||||||||||||| || |||||||||| || |
Sbjct: 86 ctccctctgtaaactaatataagagcatttagatcactact-taatgatctaaacgcttt 28
Query: 83 tatatt 88
||||||
Sbjct: 27 tatatt 22
Score = 52.0 bits (26), Expect = 2e-06
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 65 tagtgatctaaacactcttatatttctttacagagggagtac 106
|||||||||||| |||||||||| ||||||||||||||||
Sbjct: 48 tagtgatctaaatgctcttatattagtttacagagggagtac 89
>RF00906;MIR1122;CR626934.1/48037-47942 4565:Triticum aestivum
(bread wheat)
Length = 96
Score = 65.9 bits (33), Expect = 1e-10
Identities = 62/71 (87%), Gaps = 3/71 (4%)
Strand = Plus / Plus
Query: 38 aatataagagcatttagatcactacta---tagtgatctaaacactcttatatttcttta 94
||||| ||||| ||||||||||||||| ||||||||||||| |||||||||| ||||
Sbjct: 22 aatatgagagcgtttagatcactactactctagtgatctaaacgctcttatattatttta 81
Query: 95 cagagggagta 105
|| ||||||||
Sbjct: 82 catagggagta 92
Score = 61.9 bits (31), Expect = 2e-09
Identities = 68/78 (87%), Gaps = 3/78 (3%)
Strand = Plus / Minus
Query: 31 gtaaaagaatataagagcatttagatcactac--ta-tagtgatctaaacactcttatat 87
|||||| ||||||||||| |||||||||||| || ||||||||||||| |||| ||||
Sbjct: 82 gtaaaataatataagagcgtttagatcactagagtagtagtgatctaaacgctctcatat 23
Query: 88 ttctttacagagggagta 105
|| || ||||||||||||
Sbjct: 22 ttattcacagagggagta 5
>RF00906;MIR1122;EU835198.1/64297-64202 85692:Triticum turgidum
subsp. dicoccoides
Length = 96
Score = 61.9 bits (31), Expect = 2e-09
Identities = 69/81 (85%), Gaps = 3/81 (3%)
Strand = Plus / Plus
Query: 28 tccgtaaaagaatataagagcatttagatcactacta---tagtgatctaaacactctta 84
|||||||| ||||||||| | ||||||||||||||| |||||||||| || |||||
Sbjct: 12 tccgtaaagaaatataagaacgtttagatcactactattttagtgatctagacgctcttg 71
Query: 85 tatttctttacagagggagta 105
||||||||||| || ||||||
Sbjct: 72 tatttctttacggatggagta 92
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 65 tagtgatctaaacactcttatatttctttac 95
||||||||||||| ||||||||||||||||
Sbjct: 45 tagtgatctaaacgttcttatatttctttac 15
>RF00906;MIR1122;AF458277.1/188-282 85692:Triticum turgidum subsp.
dicoccoides
Length = 95
Score = 61.9 bits (31), Expect = 2e-09
Identities = 70/82 (85%), Gaps = 2/82 (2%)
Strand = Plus / Minus
Query: 23 ctccctccgtaaaagaatataagagcatttagatcactacta--tagtgatctaaacact 80
||||||| ||||| ||||||||| | ||||||||||||||| |||||||||||| |
Sbjct: 89 ctccctctgtaaactaatataagaccttttagatcactactacttagtgatctaaaaggt 30
Query: 81 cttatatttctttacagaggga 102
|||||||| ||||||||||||
Sbjct: 29 cttatattagtttacagaggga 8
Score = 50.1 bits (25), Expect = 7e-06
Identities = 72/85 (84%), Gaps = 2/85 (2%)
Strand = Plus / Plus
Query: 24 tccctccgtaaaagaatataagagcatttagatcactac-ta-tagtgatctaaacactc 81
|||||| ||||| ||||||||| | |||||||||||| || |||||||||||| ||
Sbjct: 8 tccctctgtaaactaatataagaccttttagatcactaagtagtagtgatctaaaaggtc 67
Query: 82 ttatatttctttacagagggagtac 106
||||||| ||||||||||||||||
Sbjct: 68 ttatattagtttacagagggagtac 92
>RF00906;MIR1122;AK251798.1/892-984 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 93
Score = 61.9 bits (31), Expect = 2e-09
Identities = 70/83 (84%)
Strand = Plus / Minus
Query: 23 ctccctccgtaaaagaatataagagcatttagatcactactatagtgatctaaacactct 82
|||||||| |||| |||||||||||||||||| ||||||| ||| ||||||| |||
Sbjct: 87 ctccctccataaactaatataagagcatttagaacactacttcagtaatctaaatgttct 28
Query: 83 tatatttctttacagagggagta 105
|||||| ||||| |||||||||
Sbjct: 27 tatattagtttacggagggagta 5
Score = 46.1 bits (23), Expect = 1e-04
Identities = 68/83 (81%)
Strand = Plus / Plus
Query: 23 ctccctccgtaaaagaatataagagcatttagatcactactatagtgatctaaacactct 82
||||||||||||| ||||||||| ||||||||| ||| ||||| |||||| ||||
Sbjct: 7 ctccctccgtaaactaatataagaacatttagattactgaagtagtgttctaaatgctct 66
Query: 83 tatatttctttacagagggagta 105
|||||| |||| |||||||||
Sbjct: 67 tatattagtttatggagggagta 89
>RF00906;MIR1122;AF488415.1/103662-103754 4568:Triticum monococcum
Length = 93
Score = 58.0 bits (29), Expect = 3e-08
Identities = 56/65 (86%)
Strand = Plus / Minus
Query: 38 aatataagagcatttagatcactactatagtgatctaaacactcttatatttctttacag 97
||||||| ||||||||||||| |||| |||| ||||||| |||||||||| ||||| |
Sbjct: 72 aatataaaagcatttagatcattactttagtattctaaacgctcttatattagtttacgg 13
Query: 98 aggga 102
|||||
Sbjct: 12 aggga 8
Score = 46.1 bits (23), Expect = 1e-04
Identities = 68/83 (81%)
Strand = Plus / Plus
Query: 24 tccctccgtaaaagaatataagagcatttagatcactactatagtgatctaaacactctt 83
|||||||||||| ||||||||||| |||||| |||| || ||||||||| || ||
Sbjct: 8 tccctccgtaaactaatataagagcgtttagaatactaaagtaatgatctaaatgctttt 67
Query: 84 atatttctttacagagggagtac 106
||||| |||||| |||||||||
Sbjct: 68 atattagtttacaaagggagtac 90
>RF00906;MIR1122;AK248998.1/1925-1844 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 82
Score = 58.0 bits (29), Expect = 3e-08
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 63 tatagtgatctaaacactcttatatttctttacagagggag 103
|||||||||||||| ||||||||||||||||||||||||
Sbjct: 36 tatagtgatctaaatgatcttatatttctttacagagggag 76
Score = 54.0 bits (27), Expect = 4e-07
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 19 tattctccctccgtaaaagaatataagagcatttagatcacta 61
||||||||||| ||||| ||||||||| ||||||||||||||
Sbjct: 80 tattctccctctgtaaagaaatataagatcatttagatcacta 38
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 80 tcttatatttctttacagagggagta 105
||||||||||||||||||||||||||
Sbjct: 30 tcttatatttctttacagagggagta 5
>RF00906;MIR1122;AY485644.1/177748-177656 4568:Triticum monococcum
Length = 93
Score = 56.0 bits (28), Expect = 1e-07
Identities = 67/80 (83%)
Strand = Plus / Minus
Query: 23 ctccctccgtaaaagaatataagagcatttagatcactactatagtgatctaaacactct 82
||||||||||||| |||||||||| |||||||||| | | || |||||| ||| ||||
Sbjct: 87 ctccctccgtaaactaatataagagagtttagatcacaattttaatgatctcaacgctct 28
Query: 83 tatatttctttacagaggga 102
|||||| |||||| |||||
Sbjct: 27 tatattagtttacaaaggga 8
Score = 54.0 bits (27), Expect = 4e-07
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 38 aatataagagcatttagatcactactatagtgatctaaacactcttatatttctttacag 97
||||||||||| || |||||| || || ||||||||||| |||||||||| ||||| |
Sbjct: 22 aatataagagcgttgagatcattaaaattgtgatctaaactctcttatattagtttacgg 81
Query: 98 agggagt 104
|||||||
Sbjct: 82 agggagt 88
>RF00906;MIR1122;EU626553.1/72905-73004 4572:Triticum urartu
Length = 100
Score = 52.0 bits (26), Expect = 2e-06
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 25 ccctccgtaaaagaatataagagcatttagatcactactatagtga 70
||||| ||||| |||||||||||||||||||||||| |||||||
Sbjct: 9 ccctctgtaaactaatataagagcatttagatcactaaaatagtga 54
Score = 44.1 bits (22), Expect = 4e-04
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 56 tcactactatagtgatctaaacactcttatatttctttacagaggg 101
|||||| | |||||||||||| |||||||||| |||||||||||
Sbjct: 54 tcactattttagtgatctaaatgctcttatattagtttacagaggg 9
>RF00906;MIR1122;AK250453.1/820-743 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 78
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 74 aaacactcttatatttctttacagagggagta 105
||||||||||||||| |||||||||||||||
Sbjct: 36 aaacactcttatattagtttacagagggagta 5
