miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00051;mir-17;CR390304.1/91-171 9031:Gallus gallus (chicken)
Length = 81
Score = 109 bits (55), Expect = 5e-24
Identities = 67/71 (94%)
Strand = Plus / Plus
Query: 1 gtagcactaaagtgcttatagtgcaggtagtgtttagttatctactgcattatgagcact 60
|||||||||||||||||||||||||||||||||| | | |||||||||||||| ||||||
Sbjct: 6 gtagcactaaagtgcttatagtgcaggtagtgttcactaatctactgcattataagcact 65
Query: 61 taaagtactgc 71
|||||||||||
Sbjct: 66 taaagtactgc 76
>RF00051;mir-17;ABRO01215612.1/2433-2512 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 80
Score = 101 bits (51), Expect = 1e-21
Identities = 67/71 (94%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 1 gtagcactaaagtgcttatagtgcaggtagtgtttagttatctactgcattatgagcact 60
|||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||
Sbjct: 6 gtagcactaaagtgcttatagtgcag-tagtgtccagttatctactgcattacgagcact 64
Query: 61 taaagtactgc 71
|||||||||||
Sbjct: 65 taaagtactgc 75
>RF00051;mir-17;AAPN01282049.1/1987-2067 9258:Ornithorhynchus
anatinus (platypus)
Length = 81
Score = 93.7 bits (47), Expect = 3e-19
Identities = 65/71 (91%)
Strand = Plus / Plus
Query: 1 gtagcactaaagtgcttatagtgcaggtagtgtttagttatctactgcattatgagcact 60
||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||
Sbjct: 6 gtagcactaaagtgcttatagtgcaggcaatgtttagtcgtctactgcattatgagcact 65
Query: 61 taaagtactgc 71
| |||| ||||
Sbjct: 66 tcaagtcctgc 76
>RF00051;mir-17;CAAE01014581.1/3627532-3627453 99883:Tetraodon
nigroviridis
Length = 80
Score = 67.9 bits (34), Expect = 2e-11
Identities = 56/62 (90%), Gaps = 1/62 (1%)
Strand = Plus / Plus
Query: 6 actaaagtgcttatagtgcaggtagtgtttagttatctactgcattatgagcacttaaag 65
|||||||||||||||||||||||||||||| ||||||||||| | ||||||||| |||
Sbjct: 11 actaaagtgcttatagtgcaggtagtgttt-tctatctactgcaatgtgagcacttgaag 69
Query: 66 ta 67
||
Sbjct: 70 ta 71
>RF00051;mir-17;AANH01000396.1/151070-150987 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 84
Score = 60.0 bits (30), Expect = 4e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 6 actaaagtgcttatagtgcaggtagtgttt 35
||||||||||||||||||||||||||||||
Sbjct: 11 actaaagtgcttatagtgcaggtagtgttt 40
>RF00051;mir-17;BAAF04006740.1/10036-9953 8090:Oryzias latipes
(Japanese medaka)
Length = 84
Score = 60.0 bits (30), Expect = 4e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 6 actaaagtgcttatagtgcaggtagtgttt 35
||||||||||||||||||||||||||||||
Sbjct: 11 actaaagtgcttatagtgcaggtagtgttt 40
>RF00051;mir-17;AAWZ01041387.1/1182-1261 28377:Anolis carolinensis
(green anole)
Length = 80
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 aaagtgcttatagtgcaggtagtgt 33
|||||||||||||||||||||||||
Sbjct: 14 aaagtgcttatagtgcaggtagtgt 38
>RF00051;mir-17;CAAK05051440.1/15885-15799 7955:Danio rerio
(zebrafish)
Length = 87
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 8 taaagtgcttatagtgcaggtagt 31
||||||||||||||||||||||||
Sbjct: 13 taaagtgcttatagtgcaggtagt 36
>RF00051;mir-17;CAAB01000095.1/4903-4823 31033:Takifugu rubripes
Length = 81
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 8 taaagtgcttatagtgcaggtagt 31
||||||||||||||||||||||||
Sbjct: 13 taaagtgcttatagtgcaggtagt 36
>RF00051;mir-17;ABPJ01018453.1/475-563 35575:Mchenga conophoros
Length = 89
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 8 taaagtgcttatagtgcaggtagt 31
||||||||||||||||||||||||
Sbjct: 13 taaagtgcttatagtgcaggtagt 36
>RF00051;mir-17;BAAE01210639.1/1988-1907 8090:Oryzias latipes
(Japanese medaka)
Length = 82
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 8 taaagtgcttatagtgcaggtagt 31
||||||||||||||||||||||||
Sbjct: 13 taaagtgcttatagtgcaggtagt 36
>RF00051;mir-17;AAFR03056382.1/1545-1623 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 79
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 aaagtgcttatagtgcaggtag 30
||||||||||||||||||||||
Sbjct: 14 aaagtgcttatagtgcaggtag 35
>RF00051;mir-17;ABRQ01318668.1/84-4 9813:Procavia capensis (cape
rock hyrax)
Length = 81
Score = 42.1 bits (21), Expect = 9e-04
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 9 aaagtgcttatagtgcaggtagtgtttagttatctactgca 49
|||||||||| |||||||||||| || || ||||||||||
Sbjct: 14 aaagtgcttacagtgcaggtagttttcagagatctactgca 54
>RF00051;mir-17;CAAE01014998.1/174612-174696 99883:Tetraodon
nigroviridis
Length = 85
Score = 42.1 bits (21), Expect = 9e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 8 taaagtgcttatagtgcaggtagtg 32
||||||||||| |||||||||||||
Sbjct: 13 taaagtgcttacagtgcaggtagtg 37
>RF00051;mir-17;ABPJ01055347.1/275-359 35575:Mchenga conophoros
Length = 85
Score = 42.1 bits (21), Expect = 9e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 8 taaagtgcttatagtgcaggtagtg 32
||||||||||| |||||||||||||
Sbjct: 13 taaagtgcttacagtgcaggtagtg 37
>RF00051;mir-17;BAAF04070900.1/19468-19386 8090:Oryzias latipes
(Japanese medaka)
Length = 83
Score = 42.1 bits (21), Expect = 9e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 8 taaagtgcttatagtgcaggtagtg 32
||||||||||| |||||||||||||
Sbjct: 13 taaagtgcttacagtgcaggtagtg 37
>RF00051;mir-17;AAVX01531971.1/673-753 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 42.1 bits (21), Expect = 9e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 9 aaagtgcttatagtgcaggtagtgt 33
|||||||||| ||||||||||||||
Sbjct: 14 aaagtgcttacagtgcaggtagtgt 38
