miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00655;mir-28;ABRQ01069155.1/829-914 9813:Procavia capensis
(cape rock hyrax)
Length = 86
Score = 147 bits (74), Expect = 3e-35
Identities = 83/86 (96%)
Strand = Plus / Plus
Query: 1 ggtccttgccctcaaggagctcacagtctattgagtttcctttctgactttcccactaga 60
||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct: 1 ggtccctgccctcaaggagctcacagtctattgagttgcctttctgacttccccactaga 60
Query: 61 ttgtgagctcctggagggcaggcact 86
||||||||||||||||||||||||||
Sbjct: 61 ttgtgagctcctggagggcaggcact 86
>RF00917;mir-708;ABRQ01069155.1/911-831 9813:Procavia capensis
(cape rock hyrax)
Length = 81
Score = 137 bits (69), Expect = 3e-32
Identities = 75/77 (97%)
Strand = Plus / Minus
Query: 7 tgccctcaaggagctcacagtctattgagtttcctttctgactttcccactagattgtga 66
||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct: 77 tgccctcaaggagctcacagtctattgagttgcctttctgacttccccactagattgtga 18
Query: 67 gctcctggagggcaggc 83
|||||||||||||||||
Sbjct: 17 gctcctggagggcaggc 1
>RF00917;mir-708;ABRR01063579.1/2239-2159 30538:Lama pacos
(alpaca)
Length = 81
Score = 135 bits (68), Expect = 1e-31
Identities = 77/80 (96%)
Strand = Plus / Minus
Query: 4 ccttgccctcaaggagctcacagtctattgagtttcctttctgactttcccactagattg 63
|||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct: 80 ccttgccctcaaggagctcacagtctattgagttgcctttctgcctttcccactagattt 21
Query: 64 tgagctcctggagggcaggc 83
||||||||||||||||||||
Sbjct: 20 tgagctcctggagggcaggc 1
>RF00917;mir-708;AAKN02012362.1/20992-20912 10141:Cavia porcellus
(domestic guinea pig)
Length = 81
Score = 121 bits (61), Expect = 2e-27
Identities = 76/81 (93%)
Strand = Plus / Minus
Query: 3 tccttgccctcaaggagctcacagtctattgagtttcctttctgactttcccactagatt 62
||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||
Sbjct: 81 tccttgccctcaaggagctcacagtctattgagttacttttaagactttcccactagatt 22
Query: 63 gtgagctcctggagggcaggc 83
| |||||||||||||||||||
Sbjct: 21 gggagctcctggagggcaggc 1
>RF00917;mir-708;AAHX01070100.1/15768-15688 10116:Rattus
norvegicus (Norway rat)
Length = 81
Score = 109 bits (55), Expect = 6e-24
Identities = 67/71 (94%)
Strand = Plus / Minus
Query: 13 caaggagctcacagtctattgagtttcctttctgactttcccactagattgtgagctcct 72
||||||||||||||||||||||||| | ||||||| | ||||||||||||||||||||||
Sbjct: 71 caaggagctcacagtctattgagttccttttctgattctcccactagattgtgagctcct 12
Query: 73 ggagggcaggc 83
|||||||||||
Sbjct: 11 ggagggcaggc 1
>RF00917;mir-708;AAFR03055707.1/16438-16357 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 82
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 3 tccttgccctcaaggagctcacagtcta 30
||||||| ||||||||||||||||||||
Sbjct: 82 tccttgctctcaaggagctcacagtcta 55
>RF00655;mir-28;AAFR03055707.1/16355-16441 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 87
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 3 tccttgccctcaaggagctcacagtcta 30
||||||| ||||||||||||||||||||
Sbjct: 3 tccttgctctcaaggagctcacagtcta 30
