miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00074;mir-29;AADN02039691.1/12626-12563 9031:Gallus gallus
          (chicken)
          Length = 64

 Score =  103 bits (52), Expect = 2e-22
 Identities = 61/64 (95%)
 Strand = Plus / Plus

                                                                      
Query: 1  atgactgatttcttttggtgttcagagtcaatataattttctagcaccatctgaaatcgg 60
          |||||||||||||||||||||||||||||||||  ||||||||||||||| |||||||||
Sbjct: 1  atgactgatttcttttggtgttcagagtcaataatattttctagcaccatttgaaatcgg 60

              
Query: 61 ttat 64
          ||||
Sbjct: 61 ttat 64




>RF00074;mir-29;AAVX01087182.1/157-94 7868:Callorhinchus milii
          (ghost shark)
          Length = 64

 Score = 63.9 bits (32), Expect = 2e-10
 Identities = 56/64 (87%)
 Strand = Plus / Plus

                                                                      
Query: 1  atgactgatttcttttggtgttcagagtcaatataattttctagcaccatctgaaatcgg 60
          ||||||||||||| ||||||||||||| | | | | || ||||||||||| |||||||||
Sbjct: 1  atgactgatttctcttggtgttcagaggctacacacttatctagcaccatttgaaatcgg 60

              
Query: 61 ttat 64
          ||||
Sbjct: 61 ttat 64




>RF00074;mir-29;AAVX01097121.1/1868-1805 7868:Callorhinchus milii
          (ghost shark)
          Length = 64

 Score = 60.0 bits (30), Expect = 3e-09
 Identities = 54/62 (87%)
 Strand = Plus / Plus

                                                                      
Query: 2  tgactgatttcttttggtgttcagagtcaatataattttctagcaccatctgaaatcggt 61
          ||||||||||||||||||||||||||||    |   ||||||||||||| ||||||||||
Sbjct: 2  tgactgatttcttttggtgttcagagtcttggtcgatttctagcaccatttgaaatcggt 61

            
Query: 62 ta 63
          ||
Sbjct: 62 ta 63




>RF00074;mir-29;AAWZ01025678.1/1955-1892 28377:Anolis carolinensis
          (green anole)
          Length = 64

 Score = 56.0 bits (28), Expect = 5e-08
 Identities = 55/64 (85%)
 Strand = Plus / Plus

                                                                      
Query: 1  atgactgatttcttttggtgttcagagtcaatataattttctagcaccatctgaaatcgg 60
          |||||||||||||| |||||||| ||||| |  |   ||||||||||||| |||||||||
Sbjct: 1  atgactgatttcttctggtgttcggagtctagttctctttctagcaccatttgaaatcgg 60

              
Query: 61 ttat 64
          ||||
Sbjct: 61 ttat 64




>RF00074;mir-29;BAAF04011253.1/3876-3938 8090:Oryzias latipes
          (Japanese medaka)
          Length = 63

 Score = 52.0 bits (26), Expect = 8e-07
 Identities = 54/62 (87%), Gaps = 1/62 (1%)
 Strand = Plus / Plus

                                                                      
Query: 2  tgactgatttcttttggtgttcagagtcaatataattttctagcaccatctgaaatcggt 61
          |||| |||||||||||||||||||||||  | |   ||||||||||||| ||||||||||
Sbjct: 2  tgaccgatttcttttggtgttcagagtccgt-tctgtttctagcaccatttgaaatcggt 60

            
Query: 62 ta 63
          ||
Sbjct: 61 ta 62




>RF00074;mir-29;AAVX01247987.1/1-62 7868:Callorhinchus milii
          (ghost shark)
          Length = 62

 Score = 46.1 bits (23), Expect = 5e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 36 attttctagcaccatctgaaatcggtt 62
          ||||||||||||||| |||||||||||
Sbjct: 36 attttctagcaccatttgaaatcggtt 62




>RF00074;mir-29;CAAE01015043.1/838981-839043 99883:Tetraodon
          nigroviridis
          Length = 63

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 38 tttctagcaccatctgaaatcggtta 63
          ||||||||||||| ||||||||||||
Sbjct: 37 tttctagcaccatttgaaatcggtta 62




>RF00074;mir-29;CAAB01003353.1/24980-24916 31033:Takifugu rubripes
          Length = 65

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 39 ttctagcaccatctgaaatcggttat 64
          |||||||||||| |||||||||||||
Sbjct: 40 ttctagcaccatttgaaatcggttat 65




>RF00074;mir-29;CAAB01004459.1/12691-12629 31033:Takifugu rubripes
          Length = 63

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 38 tttctagcaccatctgaaatcggtta 63
          ||||||||||||| ||||||||||||
Sbjct: 37 tttctagcaccatttgaaatcggtta 62




>RF00074;mir-29;BAAE01022609.1/1233-1169 8090:Oryzias latipes
          (Japanese medaka)
          Length = 65

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 39 ttctagcaccatctgaaatcggttat 64
          |||||||||||| |||||||||||||
Sbjct: 40 ttctagcaccatttgaaatcggttat 65




>RF00074;mir-29;AADN02044957.1/857-794 9031:Gallus gallus
          (chicken)
          Length = 64

 Score = 42.1 bits (21), Expect = 8e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 40 tctagcaccatctgaaatcggttat 64
          ||||||||||| |||||||||||||
Sbjct: 40 tctagcaccatttgaaatcggttat 64




>RF00074;mir-29;CR749762.6/80332-80264 7955:Danio rerio
          (zebrafish)
          Length = 69

 Score = 42.1 bits (21), Expect = 8e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 37 ttttctagcaccatctgaaatcggt 61
          |||||||||||||| ||||||||||
Sbjct: 40 ttttctagcaccatttgaaatcggt 64




>RF00074;mir-29;BX323868.6/63999-64062 7955:Danio rerio
          (zebrafish)
          Length = 64

 Score = 42.1 bits (21), Expect = 8e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 40 tctagcaccatctgaaatcggttat 64
          ||||||||||| |||||||||||||
Sbjct: 40 tctagcaccatttgaaatcggttat 64