miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00464;mir-92;FP015951.3/28649-28570 9823:Sus scrofa (pig)
Length = 80
Score = 117 bits (59), Expect = 2e-26
Identities = 71/75 (94%)
Strand = Plus / Plus
Query: 1 tcatccctgggtggggatttgttgcattacttgtgttctatataaagtattgcacttgtc 60
|||||| |||||||||||||||||||||||||||| | | ||||||||||||||||||||
Sbjct: 3 tcatccgtgggtggggatttgttgcattacttgtggtgtgtataaagtattgcacttgtc 62
Query: 61 ccggcctgtggaaga 75
|||||||||||||||
Sbjct: 63 ccggcctgtggaaga 77
>RF00464;mir-92;ABDC01275774.1/2124-2045 30608:Microcebus murinus
(gray mouse lemur)
Length = 80
Score = 117 bits (59), Expect = 2e-26
Identities = 71/75 (94%)
Strand = Plus / Plus
Query: 1 tcatccctgggtggggatttgttgcattacttgtgttctatataaagtattgcacttgtc 60
|||||| ||||||||||||||||||| |||||||||| ||| ||||||||||||||||||
Sbjct: 3 tcatccatgggtggggatttgttgcactacttgtgttatatgtaaagtattgcacttgtc 62
Query: 61 ccggcctgtggaaga 75
|||||||||||||||
Sbjct: 63 ccggcctgtggaaga 77
>RF00464;mir-92;AACZ02222074.1/3149-3227 9598:Pan troglodytes
(chimpanzee)
Length = 79
Score = 107 bits (54), Expect = 2e-23
Identities = 67/70 (95%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 1 tcatccctgggtggggatttgttgcattacttgtgttctatataaagtattgcacttgtc 60
|||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||
Sbjct: 3 tcatccctgggtggggatttgttgcattacttgtgttccaca-aaagtattgcacttgtc 61
Query: 61 ccggcctgtg 70
||||||||||
Sbjct: 62 ccggcctgtg 71
>RF00464;mir-92;AAIY01238597.1/3124-3045 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 80
Score = 101 bits (51), Expect = 1e-21
Identities = 69/75 (92%)
Strand = Plus / Plus
Query: 1 tcatccctgggtggggatttgttgcattacttgtgttctatataaagtattgcacttgtc 60
||||||||||||||||||| | |||||||||||||| || | | ||||||||||||||||
Sbjct: 3 tcatccctgggtggggattgggtgcattacttgtgtcctgtgtgaagtattgcacttgtc 62
Query: 61 ccggcctgtggaaga 75
|||||||||||||||
Sbjct: 63 ccggcctgtggaaga 77
>RF00464;mir-92;AAGW01169230.1/2308-2388 9986:Oryctolagus
cuniculus (rabbit)
Length = 81
Score = 95.6 bits (48), Expect = 7e-20
Identities = 61/64 (95%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 10 ggtggggatttgttgcattacttgtgttctata-taaagtattgcacttgtcccggcctg 68
||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 12 ggtggggatttgtcgcattacttgtgttctatggtaaagtattgcacttgtcccggcctg 71
Query: 69 tgga 72
||||
Sbjct: 72 tgga 75
>RF00464;mir-92;AAHY01210291.1/5443-5364 10090:Mus musculus (house
mouse)
Length = 80
Score = 91.7 bits (46), Expect = 1e-18
Identities = 61/66 (92%)
Strand = Plus / Plus
Query: 10 ggtggggatttgttgcattacttgtgttctatataaagtattgcacttgtcccggcctgt 69
|||||||||| || |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 12 ggtggggattggtggcattacttgtgttagatataaagtattgcacttgtcccggcctga 71
Query: 70 ggaaga 75
||||||
Sbjct: 72 ggaaga 77
>RF00464;mir-92;ABQF01018395.1/1757-1837 59729:Taeniopygia guttata
Length = 81
Score = 83.8 bits (42), Expect = 3e-16
Identities = 61/66 (92%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 8 tgggtggggatttgttgcattacttgt-gttctatataaagtattgcacttgtcccggcc 66
||||||||||||||||||||||||||| | | ||| || |||||||||||||||||||||
Sbjct: 10 tgggtggggatttgttgcattacttgtagctgtatgtagagtattgcacttgtcccggcc 69
Query: 67 tgtgga 72
||||||
Sbjct: 70 tgtgga 75
>RF00464;mir-92;AAWZ01041388.1/1227-1308 28377:Anolis carolinensis
(green anole)
Length = 82
Score = 71.9 bits (36), Expect = 1e-12
Identities = 63/71 (88%), Gaps = 2/71 (2%)
Strand = Plus / Plus
Query: 4 tccctgggtggggatttgttgcattacttgt--gttctatataaagtattgcacttgtcc 61
||||||||| ||||||||||||||||||||| |||| | | ||||||||||||||||
Sbjct: 6 tccctgggttgggatttgttgcattacttgtgggttccctgaacagtattgcacttgtcc 65
Query: 62 cggcctgtgga 72
|||||||||||
Sbjct: 66 cggcctgtgga 76
>RF00464;mir-92;ABRQ01318667.1/1002-921 9813:Procavia capensis
(cape rock hyrax)
Length = 82
Score = 69.9 bits (35), Expect = 4e-12
Identities = 62/70 (88%), Gaps = 2/70 (2%)
Strand = Plus / Plus
Query: 8 tgggtggggatttgttgcattacttg--tgttctatataaagtattgcacttgtcccggc 65
|||||||||||| | ||||||||||| | || |||||| ||||||||||||||||||||
Sbjct: 10 tgggtggggattgggtgcattacttgcattttatatatatagtattgcacttgtcccggc 69
Query: 66 ctgtggaaga 75
|| |||||||
Sbjct: 70 ctatggaaga 79
>RF00464;mir-92;ABQO010442129.1/1114-1031 9315:Macropus eugenii
(tammar wallaby)
Length = 84
Score = 63.9 bits (32), Expect = 3e-10
Identities = 62/69 (89%), Gaps = 6/69 (8%)
Strand = Plus / Plus
Query: 9 gggtggggatttgttgcattacttg----tgt-tctatataaagtattgcacttgtcccg 63
||||||||||||||||||||||||| ||| |||||| | ||||||||||||||||||
Sbjct: 11 gggtggggatttgttgcattacttgatcttgtgtctata-agagtattgcacttgtcccg 69
Query: 64 gcctgtgga 72
|||||||||
Sbjct: 70 gcctgtgga 78
>RF00464;mir-92;AAFR03056382.1/2360-2443 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 84
Score = 56.0 bits (28), Expect = 6e-08
Identities = 61/69 (88%), Gaps = 6/69 (8%)
Strand = Plus / Plus
Query: 9 gggtggggatttgttgcattacttg----tgtt-ctatataaagtattgcacttgtcccg 63
||||||||||||||||||||||||| ||| ||||| | ||||||||||||||||||
Sbjct: 11 gggtggggatttgttgcattacttgatcatgtgactata-agagtattgcacttgtcccg 69
Query: 64 gcctgtgga 72
|||||||||
Sbjct: 70 gcctgtgga 78
>RF00464;mir-92;CAAK05051440.1/15632-15557 7955:Danio rerio
(zebrafish)
Length = 76
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 45 aagtattgcacttgtcccggcctgtg 70
||||||||||||||||||||||||||
Sbjct: 43 aagtattgcacttgtcccggcctgtg 68
>RF00464;mir-92;CAAB01000095.1/4670-4593 31033:Takifugu rubripes
Length = 78
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 47 gtattgcacttgtcccggcctgtgga 72
||||||||||||||||||||||||||
Sbjct: 47 gtattgcacttgtcccggcctgtgga 72
>RF00464;mir-92;CAAB01003114.1/24863-24787 31033:Takifugu rubripes
Length = 77
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 47 gtattgcacttgtcccggcctgtg 70
||||||||||||||||||||||||
Sbjct: 46 gtattgcacttgtcccggcctgtg 69
>RF00464;mir-92;CT033786.13/50148-50227 10090:Mus musculus (house
mouse)
Length = 80
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 47 gtattgcacttgtcccggcctgt 69
|||||||||||||||||||||||
Sbjct: 49 gtattgcacttgtcccggcctgt 71
>RF00464;mir-92;AAYZ01184872.1/1157-1234 9978:Ochotona princeps
(American pika)
Length = 78
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 47 gtattgcacttgtcccggcctgt 69
|||||||||||||||||||||||
Sbjct: 47 gtattgcacttgtcccggcctgt 69
>RF00464;mir-92;AADN02029366.1/34887-34810 9031:Gallus gallus
(chicken)
Length = 78
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 47 gtattgcacttgtcccggcctgt 69
|||||||||||||||||||||||
Sbjct: 47 gtattgcacttgtcccggcctgt 69
>RF00464;mir-92;CAAK05029381.1/12544-12621 7955:Danio rerio
(zebrafish)
Length = 78
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 47 gtattgcacttgtcccggcctgt 69
|||||||||||||||||||||||
Sbjct: 47 gtattgcacttgtcccggcctgt 69
>RF00464;mir-92;AANH01005312.1/95223-95146 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 78
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 47 gtattgcacttgtcccggcctgt 69
|||||||||||||||||||||||
Sbjct: 47 gtattgcacttgtcccggcctgt 69
>RF00464;mir-92;AANH01000396.1/150776-150700 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 77
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 47 gtattgcacttgtcccggcctgt 69
|||||||||||||||||||||||
Sbjct: 46 gtattgcacttgtcccggcctgt 68
>RF00464;mir-92;BAAE01210639.1/1758-1680 8090:Oryzias latipes
(Japanese medaka)
Length = 79
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 47 gtattgcacttgtcccggcctgt 69
|||||||||||||||||||||||
Sbjct: 48 gtattgcacttgtcccggcctgt 70
>RF00464;mir-92;BAAE01057416.1/1171-1095 8090:Oryzias latipes
(Japanese medaka)
Length = 77
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 47 gtattgcacttgtcccggcctgt 69
|||||||||||||||||||||||
Sbjct: 46 gtattgcacttgtcccggcctgt 68
>RF00464;mir-92;ABEP02031049.1/2682-2605 7739:Branchiostoma
floridae (Florida lancelet)
Length = 78
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 46 agtattgcacttgtcccggcct 67
||||||||||||||||||||||
Sbjct: 46 agtattgcacttgtcccggcct 67
>RF00464;mir-92;AAGJ02142502.1/20488-20574 7668:Strongylocentrotus
purpuratus
Length = 87
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 48 tattgcacttgtcccggcctg 68
|||||||||||||||||||||
Sbjct: 57 tattgcacttgtcccggcctg 77
