miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00670;mir-105;ABRO01195452.1/9888-9808 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 81
Score = 137 bits (69), Expect = 2e-32
Identities = 78/81 (96%)
Strand = Plus / Plus
Query: 1 tgtgcatcgtggtcaaatgctcagactcctgtggtggctgctcatgcaccacggatgttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgtgcatcgtggtcaaatgctcagactcctgtggtggctgctcatgcaccacggatgttt 60
Query: 61 gagcatgtgctacggtgtcta 81
|||||| ||| | ||||||||
Sbjct: 61 gagcatatgccatggtgtcta 81
>RF00670;mir-105;AAEX02003804.1/918-997 9615:Canis lupus
familiaris (dog)
Length = 80
Score = 105 bits (53), Expect = 8e-23
Identities = 75/81 (92%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 1 tgtgcatcgtggtcaaatgctcagactcctgtggtggctgctcatgcaccacggatgttt 60
|||||||| ||||||||||||||||||||| ||||||||||| |||||||| | ||||||
Sbjct: 1 tgtgcatcatggtcaaatgctcagactcct-tggtggctgcttatgcaccatgaatgttt 59
Query: 61 gagcatgtgctacggtgtcta 81
|||||||||||| ||||||||
Sbjct: 60 gagcatgtgctatggtgtcta 80
>RF00670;mir-105;AAIY01029761.1/2576-2497 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 80
Score = 81.8 bits (41), Expect = 1e-15
Identities = 72/81 (88%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 1 tgtgcatcgtggtcaaatgctcagactcctgtggtggctgctcatgcaccacggatgttt 60
||||||| |||||||||||||||||||||||| ||||||| | ||||||| |||| |||
Sbjct: 1 tgtgcattgtggtcaaatgctcagactcctgttgtggctgtttgtgcaccatggat-ttt 59
Query: 61 gagcatgtgctacggtgtcta 81
|||||||||||| || |||||
Sbjct: 60 gagcatgtgctatggcgtcta 80
>RF00670;mir-105;AABR04012381.1/35187-35107 10116:Rattus
norvegicus (Norway rat)
Length = 81
Score = 67.9 bits (34), Expect = 2e-11
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 12 gtcaaatgctcagactcctgtggtggctgctcatgcaccacggatgtttgagcatgtgct 71
||||| |||||||| |||||||||||||| ||| | ||||||||||||||||||||||
Sbjct: 12 gtcaagtgctcagatgtctgtggtggctgcttatgtatcacggatgtttgagcatgtgct 71
Query: 72 acggtgtcta 81
| ||| ||||
Sbjct: 72 atggtatcta 81
>RF00670;mir-105;AANN01683306.1/2545-2466 9365:Erinaceus europaeus
(western European hedgehog)
Length = 80
Score = 61.9 bits (31), Expect = 1e-09
Identities = 53/59 (89%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 8 cgtggtcaaatgctcagactcctgtggtggctgctcatgcaccacggatgtttgagcat 66
||||||||||||||||| |||| ||||| | || | |||||||||||||||||||||||
Sbjct: 8 cgtggtcaaatgctcaggctcc-gtggtagttgattatgcaccacggatgtttgagcat 65
>RF00670;mir-105;CAAA01059274.1/4642-4722 10090:Mus musculus
(house mouse)
Length = 81
Score = 61.9 bits (31), Expect = 1e-09
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 30 tgtggtggctgctcatgcaccacggatgtttgagcatgtgcta 72
||||||||||||| |||||||||| ||| ||||||||||||||
Sbjct: 30 tgtggtggctgcttatgcaccacgaatgcttgagcatgtgcta 72
>RF00670;mir-105;AAWR02040596.1/7734-7654 9796:Equus caballus
(horse)
Length = 81
Score = 60.0 bits (30), Expect = 4e-09
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 9 gtggtcaaatgctcagactcctgtggtggctgctcatgcaccacggatgtttga 62
||||||||||| || |||| ||||| ||||||||||||||| | ||||||||||
Sbjct: 9 gtggtcaaatgttctgactgctgtgctggctgctcatgcactatggatgtttga 62
>RF00670;mir-105;AAEX02003804.1/4224-4304 9615:Canis lupus
familiaris (dog)
Length = 81
Score = 60.0 bits (30), Expect = 4e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 29 ctgtggtggctgctcatgcaccacggatgtttga 62
|||||||||||||||||||||| |||||||||||
Sbjct: 29 ctgtggtggctgctcatgcacctcggatgtttga 62
>RF00670;mir-105;AANN01683306.1/428-348 9365:Erinaceus europaeus
(western European hedgehog)
Length = 81
Score = 52.0 bits (26), Expect = 1e-06
Identities = 62/74 (83%)
Strand = Plus / Plus
Query: 7 tcgtggtcaaatgctcagactcctgtggtggctgctcatgcaccacggatgtttgagcat 66
|||| |||||||||||||| |||||| |||||| || ||| || || | ||| |||||||
Sbjct: 7 tcgtagtcaaatgctcagattcctgtagtggcttctgatgtactacagctgtctgagcat 66
Query: 67 gtgctacggtgtct 80
|||| |||| ||||
Sbjct: 67 gtgccacggcgtct 80
>RF00670;mir-105;AANG01759982.1/244-164 9685:Felis catus (domestic
cat)
Length = 81
Score = 50.1 bits (25), Expect = 4e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 30 tgtggtggctgctcatgcaccacggatgtttga 62
||||||||||||| |||||||| ||||||||||
Sbjct: 30 tgtggtggctgcttatgcaccatggatgtttga 62
>RF00670;mir-105;ABRT010308690.1/936-856 9478:Tarsius syrichta
(Philippine tarsier)
Length = 81
Score = 46.1 bits (23), Expect = 7e-05
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 11 ggtcaaatgctcagactcctgtggtggctgctcatgcaccacggatgtttg 61
|||||||| || |||| |||||||||||||| |||||||| | |||||||
Sbjct: 12 ggtcaaatattctgactactgtggtggctgcttatgcaccatgaatgtttg 62
>RF00670;mir-105;ABRO01195452.1/8720-8641 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 80
Score = 46.1 bits (23), Expect = 7e-05
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 29 ctgtggtggctgctcatgcaccacggatgtttgagcatg 67
|||||||||||||| |||||||| |||||| ||| ||||
Sbjct: 28 ctgtggtggctgcttatgcaccatggatgtgtgaccatg 66
>RF00670;mir-105;ABRQ01630446.1/1144-1065 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 44.1 bits (22), Expect = 3e-04
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 13 tcaaatgctcagactcctgtggtggctgctcatgcaccacggatgtttgagcat 66
|||| |||||||||| |||| || |||||| ||||| || |||||||||||||
Sbjct: 13 tcaattgctcagacttctgtagtagctgctgatgcatcatagatgtttgagcat 66
