miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00051;mir-17;ABRQ01318668.1/84-4 9813:Procavia capensis (cape
rock hyrax)
Length = 81
Score = 137 bits (69), Expect = 2e-32
Identities = 78/81 (96%)
Strand = Plus / Plus
Query: 1 ccttggccatgtaaaagtgcttacagtgcaggtagctttttgagatctactgcaatgcaa 60
||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 1 ccttggccatgtaaaagtgcttacagtgcaggtagttttcagagatctactgcaatgcaa 60
Query: 61 gcacttcttacattaccatgg 81
|||||||||||||||||||||
Sbjct: 61 gcacttcttacattaccatgg 81
>RF00051;mir-17;AAGV020837898.1/118-39 9361:Dasypus novemcinctus
(nine-banded armadillo)
Length = 80
Score = 121 bits (61), Expect = 1e-27
Identities = 74/77 (96%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 5 ggccatgtaaaagtgcttacagtgcaggtagctttttgagatctactgcaatgcaagcac 64
|||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct: 5 ggccgtgtaaaagtgcttgcagtgcaggtag-tttttgagatctactgcaatgcaagcac 63
Query: 65 ttcttacattaccatgg 81
|||||||||||||||||
Sbjct: 64 ttcttacattaccatgg 80
>RF00051;mir-17;AAPN01018584.1/1527-1606 9258:Ornithorhynchus
anatinus (platypus)
Length = 80
Score = 73.8 bits (37), Expect = 3e-13
Identities = 62/69 (89%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 13 aaaagtgcttacagtgcaggtagctttttgagatctactgcaatgcaagcacttcttaca 72
|||||||||||||||||||||||||||| | | ||||||||||| |||||||||| ||
Sbjct: 13 aaaagtgcttacagtgcaggtagcttttag-tacctactgcaatgtaagcacttctagca 71
Query: 73 ttaccatgg 81
|||||||||
Sbjct: 72 ttaccatgg 80
>RF00051;mir-17;CAAB01000095.1/5425-5345 31033:Takifugu rubripes
Length = 81
Score = 50.1 bits (25), Expect = 4e-06
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 14 aaagtgcttacagtgcaggtagctttttgagatctactgca 54
|||||||||||||||||||||| || ||| ||||||||||
Sbjct: 14 aaagtgcttacagtgcaggtagtttgatgacatctactgca 54
>RF00051;mir-17;AANH01005312.1/96166-96086 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 81
Score = 50.1 bits (25), Expect = 4e-06
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 14 aaagtgcttacagtgcaggtagctttttgagatctactgca 54
|||||||||||||||||||||| ||| | | ||||||||||
Sbjct: 14 aaagtgcttacagtgcaggtagttttatcaaatctactgca 54
>RF00051;mir-17;AAHX01085677.1/1620-1701 10116:Rattus norvegicus
(Norway rat)
Length = 82
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 9 atgtaaaagtgcttacagtgcaggtag 35
|||| ||||||||||||||||||||||
Sbjct: 9 atgtcaaagtgcttacagtgcaggtag 35
>RF00051;mir-17;ABQF01018395.1/1087-1166 59729:Taeniopygia guttata
Length = 80
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 13 aaaagtgcttacagtgcaggtag 35
|||||||||||||||||||||||
Sbjct: 13 aaaagtgcttacagtgcaggtag 35
>RF00051;mir-17;AADN02013295.1/455-376 9031:Gallus gallus
(chicken)
Length = 80
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 13 aaaagtgcttacagtgcaggtag 35
|||||||||||||||||||||||
Sbjct: 13 aaaagtgcttacagtgcaggtag 35
>RF00051;mir-17;AADN02029366.1/35604-35522 9031:Gallus gallus
(chicken)
Length = 83
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 9 atgtaaaagtgcttacagtgcaggtag 35
|||| ||||||||||||||||||||||
Sbjct: 9 atgtcaaagtgcttacagtgcaggtag 35
>RF00051;mir-17;AAVX01531971.1/673-753 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 9 atgtaaaagtgcttacagtgcaggtag 35
|||| ||||||||||||||||||||||
Sbjct: 9 atgtcaaagtgcttacagtgcaggtag 35
>RF00051;mir-17;AAFR03056382.1/1545-1623 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 79
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 10 tgtaaaagtgcttacagtgcaggtag 35
|||||||||||||| |||||||||||
Sbjct: 10 tgtaaaagtgcttatagtgcaggtag 35
>RF00051;mir-17;CAAK05051440.1/16292-16212 7955:Danio rerio
(zebrafish)
Length = 81
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 14 aaagtgcttacagtgcaggtag 35
||||||||||||||||||||||
Sbjct: 14 aaagtgcttacagtgcaggtag 35
>RF00051;mir-17;CAAK05029381.1/11768-11850 7955:Danio rerio
(zebrafish)
Length = 83
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 14 aaagtgcttacagtgcaggtag 35
||||||||||||||||||||||
Sbjct: 14 aaagtgcttacagtgcaggtag 35
>RF00051;mir-17;CAAE01014998.1/174612-174696 99883:Tetraodon
nigroviridis
Length = 85
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 14 aaagtgcttacagtgcaggtag 35
||||||||||||||||||||||
Sbjct: 14 aaagtgcttacagtgcaggtag 35
>RF00051;mir-17;CAAB01003114.1/25632-25550 31033:Takifugu rubripes
Length = 83
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 14 aaagtgcttacagtgcaggtag 35
||||||||||||||||||||||
Sbjct: 14 aaagtgcttacagtgcaggtag 35
>RF00051;mir-17;ABPJ01055347.1/275-359 35575:Mchenga conophoros
Length = 85
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 14 aaagtgcttacagtgcaggtag 35
||||||||||||||||||||||
Sbjct: 14 aaagtgcttacagtgcaggtag 35
>RF00051;mir-17;AANH01000396.1/151542-151460 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 83
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 14 aaagtgcttacagtgcaggtag 35
||||||||||||||||||||||
Sbjct: 14 aaagtgcttacagtgcaggtag 35
>RF00051;mir-17;BAAF04006740.1/10494-10412 8090:Oryzias latipes
(Japanese medaka)
Length = 83
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 14 aaagtgcttacagtgcaggtag 35
||||||||||||||||||||||
Sbjct: 14 aaagtgcttacagtgcaggtag 35
>RF00051;mir-17;BAAF04070900.1/19468-19386 8090:Oryzias latipes
(Japanese medaka)
Length = 83
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 14 aaagtgcttacagtgcaggtag 35
||||||||||||||||||||||
Sbjct: 14 aaagtgcttacagtgcaggtag 35
>RF00051;mir-17;BAAF04019480.1/14298-14217 8090:Oryzias latipes
(Japanese medaka)
Length = 82
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 14 aaagtgcttacagtgcaggtag 35
||||||||||||||||||||||
Sbjct: 14 aaagtgcttacagtgcaggtag 35
