miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00452;mir-172;AM481129.2/11694-11833 29760:Vitis vinifera
          Length = 140

 Score =  254 bits (128), Expect = 3e-67
 Identities = 138/140 (98%), Gaps = 1/140 (0%)
 Strand = Plus / Plus

                                                                       
Query: 2   ctgtttgcggatggagcatcatcaagattcacaagtattgagactcagtgcgtggtggtg 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ctgtttgcggatggagcatcatcaagattcacaagtattgagactcagtgcgtggtggtg 60

                                                                       
Query: 62  atggtgacttttgtggtcccttcc-acactccgatggctctttgatatgggaatcttgat 120
           |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct: 61  atggtgacttttgtggtcccttcctacactccgatggctctttgatgtgggaatcttgat 120

                               
Query: 121 gatgctgcagcggcaataaa 140
           ||||||||||||||||||||
Sbjct: 121 gatgctgcagcggcaataaa 140




>RF00452;mir-172;AASG02005670.1/14724-14879 3988:Ricinus communis
           (castor bean)
          Length = 156

 Score = 81.8 bits (41), Expect = 2e-15
 Identities = 41/41 (100%)
 Strand = Plus / Plus

                                                    
Query: 100 ctttgatatgggaatcttgatgatgctgcagcggcaataaa 140
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 116 ctttgatatgggaatcttgatgatgctgcagcggcaataaa 156



 Score = 60.0 bits (30), Expect = 8e-09
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                            
Query: 2  ctgtttgcggatggagcatcatcaagattcacaa 35
          |||||||| |||||||||||||||||||||||||
Sbjct: 1  ctgtttgctgatggagcatcatcaagattcacaa 34




>RF00452;mir-172;ABIM01001078.1/716-916 3649:Carica papaya (papaya)
          Length = 201

 Score = 71.9 bits (36), Expect = 2e-12
 Identities = 43/44 (97%), Gaps = 1/44 (2%)
 Strand = Plus / Plus

                                                       
Query: 98  ctctttgat-atgggaatcttgatgatgctgcagcggcaataaa 140
           ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 158 ctctttgattatgggaatcttgatgatgctgcagcggcaataaa 201



 Score = 67.9 bits (34), Expect = 3e-11
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                            
Query: 2  ctgtttgcggatggagcatcatcaagattcacaa 35
          ||||||||||||||||||||||||||||||||||
Sbjct: 1  ctgtttgcggatggagcatcatcaagattcacaa 34




>RF00452;mir-172;AARH01004394.1/257332-257189 3694:Populus
           trichocarpa
          Length = 144

 Score = 71.9 bits (36), Expect = 2e-12
 Identities = 121/145 (83%), Gaps = 7/145 (4%)
 Strand = Plus / Plus

                                                                       
Query: 2   ctgtttgcggatggagcatcatcaagattcacaag---tattgagactcagtgcgtggtg 58
           ||||||||  |||||||||||||||||||||||||   ||||  | || |||| ||||||
Sbjct: 1   ctgtttgcctatggagcatcatcaagattcacaagctttattagggct-agtgtgtggtg 59

                                                                       
Query: 59  gtgatggtgacttttg-tggtcccttcca--cactccgatggctctttgatatgggaatc 115
            |||||||| |||||| |||||||||     || ||| || || ||||||  ||||||||
Sbjct: 60  atgatggtggcttttggtggtccctttttttcaatccaatagccctttgaattgggaatc 119

                                    
Query: 116 ttgatgatgctgcagcggcaataaa 140
           |||||||||||||||||||||||||
Sbjct: 120 ttgatgatgctgcagcggcaataaa 144




>RF00452;mir-172;AARH01003915.1/155600-155740 3694:Populus
          trichocarpa
          Length = 141

 Score = 56.0 bits (28), Expect = 1e-07
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                          
Query: 3  tgtttgcggatggagcatcatcaagattcaca 34
          ||||||||| ||||||||||||||||||||||
Sbjct: 2  tgtttgcgggtggagcatcatcaagattcaca 33



 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 111 gaatcttgatgatgctgcagcggcaataaa 140
           ||||||||||||||||||| ||||||||||
Sbjct: 112 gaatcttgatgatgctgcatcggcaataaa 141




>RF00452;mir-172;EU549232.1/232-344 3702:Arabidopsis thaliana (thale
           cress)
          Length = 113

 Score = 54.0 bits (27), Expect = 5e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 111 gaatcttgatgatgctgcagcggcaat 137
           |||||||||||||||||||||||||||
Sbjct: 84  gaatcttgatgatgctgcagcggcaat 110




>RF00452;mir-172;AY728437.1/1-132 3694:Populus trichocarpa
          Length = 132

 Score = 54.0 bits (27), Expect = 5e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 108 tgggaatcttgatgatgctgcagcggc 134
           |||||||||||||||||||||||||||
Sbjct: 106 tgggaatcttgatgatgctgcagcggc 132




>RF00452;mir-172;AARH01000428.1/33766-33584 3694:Populus trichocarpa
          Length = 183

 Score = 54.0 bits (27), Expect = 5e-07
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                          
Query: 106 tatgggaatcttgatgatgctgcagcggcaa 136
           |||||||||||||||||||||||| ||||||
Sbjct: 149 tatgggaatcttgatgatgctgcatcggcaa 179




>RF00452;mir-172;AARH01003860.1/86743-86610 3694:Populus trichocarpa
          Length = 134

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 107 atgggaatcttgatgatgctgcagcggcaa 136
           ||||||||||||||||||||||| ||||||
Sbjct: 101 atgggaatcttgatgatgctgcatcggcaa 130




>RF00452;mir-172;AC182714.2/88903-88742 3694:Populus trichocarpa
          Length = 162

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 111 gaatcttgatgatgctgcagcggcaataaa 140
           ||||||||||||||||||| ||||||||||
Sbjct: 133 gaatcttgatgatgctgcatcggcaataaa 162




>RF00452;mir-172;BABK01012763.1/1927-2053 34305:Lotus japonicus
          Length = 127

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                            
Query: 3  tgtttgcggatggagcatcatcaagattcacaag 36
          ||||||| | ||||||||||||||||||||||||
Sbjct: 2  tgtttgctggtggagcatcatcaagattcacaag 35



 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                             
Query: 97  gctctttgatatgggaatcttgatgatgctgcag 130
           |||||||||| || ||||||||||||||||||||
Sbjct: 89  gctctttgatttgagaatcttgatgatgctgcag 122




>RF00452;mir-172;CAAP02003282.1/14594-14705 29760:Vitis vinifera
          Length = 112

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 111 gaatcttgatgatgctgcagcggcaataaa 140
           ||||||||||||||||||| ||||||||||
Sbjct: 83  gaatcttgatgatgctgcatcggcaataaa 112



 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                          
Query: 3  tgtttgcggatggagcatcatcaagattcaca 34
          |||||||| ||| |||||||||||||||||||
Sbjct: 2  tgtttgcgcatgtagcatcatcaagattcaca 33




>RF00452;mir-172;CAAP02002749.1/38930-38796 29760:Vitis vinifera
          Length = 135

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 100 ctttgatatgggaatcttgatgatgctgca 129
           |||| |||||||||||||||||||||||||
Sbjct: 95  ctttcatatgggaatcttgatgatgctgca 124



 Score = 50.1 bits (25), Expect = 8e-06
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                           
Query: 3  tgtttgcggatggagcatcatcaagattcacaa 35
          |||||||||||| |||||||| |||||||||||
Sbjct: 2  tgtttgcggatgcagcatcatgaagattcacaa 34




>RF00452;mir-172;EU549227.1/243-121 3702:Arabidopsis thaliana (thale
           cress)
          Length = 123

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 106 tatgggaatcttgatgatgctgcagcggcaat 137
           |||| ||||||||||||||||||||| |||||
Sbjct: 89  tatgagaatcttgatgatgctgcagctgcaat 120



 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 13 tggagcatcatcaagattcacaa 35
          |||||||||||||||||||||||
Sbjct: 12 tggagcatcatcaagattcacaa 34




>RF00452;mir-172;AASG02011039.1/5310-5468 3988:Ricinus communis
          (castor bean)
          Length = 159

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                          
Query: 3  tgtttgcggatggagcatcatcaagattcaca 34
          ||||||||| || |||||||||||||||||||
Sbjct: 2  tgtttgcgggtgtagcatcatcaagattcaca 33



 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 111 gaatcttgatgatgctgcagcggcaataaa 140
           ||||||||||||||||||| | ||||||||
Sbjct: 130 gaatcttgatgatgctgcatcagcaataaa 159




>RF00452;mir-172;AM457961.2/1662-1782 29760:Vitis vinifera
          Length = 121

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 111 gaatcttgatgatgctgcagcggcaata 138
           ||||||||||||||||||| ||||||||
Sbjct: 92  gaatcttgatgatgctgcatcggcaata 119




>RF00452;mir-172;CAAP02000586.1/29172-29291 29760:Vitis vinifera
          Length = 120

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 111 gaatcttgatgatgctgcagcggcaata 138
           ||||||||||||||||||| ||||||||
Sbjct: 91  gaatcttgatgatgctgcatcggcaata 118




>RF00452;mir-172;ABIM01015449.1/13104-12974 3649:Carica papaya
           (papaya)
          Length = 131

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 107 atgggaatcttgatgatgctgca 129
           |||||||||||||||||||||||
Sbjct: 98  atgggaatcttgatgatgctgca 120




>RF00452;mir-172;FM163855.1/191-306 3702:Arabidopsis thaliana (thale
           cress)
          Length = 116

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 111 gaatcttgatgatgctgcagcggcaat 137
           ||||||||||||||||||| |||||||
Sbjct: 87  gaatcttgatgatgctgcatcggcaat 113




>RF00452;mir-172;ABIM01012229.1/3274-3102 3649:Carica papaya
           (papaya)
          Length = 173

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 111 gaatcttgatgatgctgcagcggcaataaa 140
           ||||||||||||||||||| |||| |||||
Sbjct: 144 gaatcttgatgatgctgcatcggccataaa 173




>RF00452;mir-172;AC189648.2/24074-23978 51351:Brassica rapa subsp.
           pekinensis
          Length = 97

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 108 tgggaatcttgatgatgctgca 129
           ||||||||||||||||||||||
Sbjct: 65  tgggaatcttgatgatgctgca 86




>RF00452;mir-172;EU549250.1/242-366 3702:Arabidopsis thaliana (thale
           cress)
          Length = 125

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 108 tgggaatcttgatgatgctgca 129
           ||||||||||||||||||||||
Sbjct: 93  tgggaatcttgatgatgctgca 114




>RF00452;mir-172;BABK01107385.1/174-85 34305:Lotus japonicus
          Length = 90

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 111 gaatcttgatgatgctgcagcggcaataaa 140
           ||||||||||||||||||| | ||||||||
Sbjct: 61  gaatcttgatgatgctgcatcagcaataaa 90




>RF00452;mir-172;AC165172.2/39243-39397 4577:Zea mays
          Length = 155

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 108 tgggaatcttgatgatgctgca 129
           ||||||||||||||||||||||
Sbjct: 123 tgggaatcttgatgatgctgca 144




>RF00452;mir-172;EU974220.1/371-523 4577:Zea mays
          Length = 153

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 108 tgggaatcttgatgatgctgca 129
           ||||||||||||||||||||||
Sbjct: 121 tgggaatcttgatgatgctgca 142




>RF00452;mir-172;ABXC01002369.1/66790-66601 4558:Sorghum bicolor
           (sorghum)
          Length = 190

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 108 tgggaatcttgatgatgctgca 129
           ||||||||||||||||||||||
Sbjct: 158 tgggaatcttgatgatgctgca 179




>RF00452;mir-172;AP003298.3/17210-16973 39947:Oryza sativa Japonica
           Group
          Length = 238

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 108 tgggaatcttgatgatgctgca 129
           ||||||||||||||||||||||
Sbjct: 206 tgggaatcttgatgatgctgca 227