miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00258;mir-130;ABRQ01005074.1/1153-1071 9813:Procavia capensis
(cape rock hyrax)
Length = 83
Score = 155 bits (78), Expect = 1e-37
Identities = 78/78 (100%)
Strand = Plus / Plus
Query: 4 tgctggccagagctcttttcacattgtgctactgtctgcacctgtcactagcagtgcaat 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgctggccagagctcttttcacattgtgctactgtctgcacctgtcactagcagtgcaat 60
Query: 64 gttaaaagggcattggcc 81
||||||||||||||||||
Sbjct: 61 gttaaaagggcattggcc 78
>RF00258;mir-130;AAPN01026753.1/160-77 9258:Ornithorhynchus
anatinus (platypus)
Length = 84
Score = 91.7 bits (46), Expect = 1e-18
Identities = 55/58 (94%)
Strand = Plus / Plus
Query: 8 ggccagagctcttttcacattgtgctactgtctgcacctgtcactagcagtgcaatgt 65
|||| |||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 5 ggccggagctcttttcacattgtgctactgtctgcgcccgtcactagcagtgcaatgt 62
>RF00258;mir-130;AL928914.15/23540-23459 10090:Mus musculus (house
mouse)
Length = 82
Score = 85.7 bits (43), Expect = 9e-17
Identities = 74/83 (89%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 4 tgctggccagagctcttttcacattgtgctactgtctgcacctgtcactagcagtgcaat 63
|||||||| |||||||||||||||||||||||||||| || ||| | |||||||||||
Sbjct: 1 tgctggccggagctcttttcacattgtgctactgtct-aacgtgtaccgagcagtgcaat 59
Query: 64 gttaaaagggcattggccgtgta 86
||||||||||||| |||| ||||
Sbjct: 60 gttaaaagggcatcggccttgta 82
>RF00258;mir-130;AAWZ01013434.1/100052-99970 28377:Anolis
carolinensis (green anole)
Length = 83
Score = 73.8 bits (37), Expect = 3e-13
Identities = 58/65 (89%)
Strand = Plus / Plus
Query: 15 gctcttttcacattgtgctactgtctgcacctgtcactagcagtgcaatgttaaaagggc 74
||||||||||||||||||| ||||||| || | | | ||||||||||||||||||||||
Sbjct: 12 gctcttttcacattgtgcttctgtctgtgcccgacccaagcagtgcaatgttaaaagggc 71
Query: 75 attgg 79
|||||
Sbjct: 72 attgg 76
>RF00258;mir-130;AAPN01410230.1/3519-3435 9258:Ornithorhynchus
anatinus (platypus)
Length = 85
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 53 agcagtgcaatgttaaaagggcattggcc 81
|||||||||||||||||||||||||||||
Sbjct: 51 agcagtgcaatgttaaaagggcattggcc 79
>RF00258;mir-130;AAFR03064223.1/4789-4711 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 79
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 54 gcagtgcaatgttaaaagggcattggccg 82
|||||||||||||||||||||||||||||
Sbjct: 48 gcagtgcaatgttaaaagggcattggccg 76
>RF00258;mir-130;AAFR03045417.1/53001-53085 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 85
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 53 agcagtgcaatgttaaaagggcattggcc 81
|||||||||||||||||||||||||||||
Sbjct: 51 agcagtgcaatgttaaaagggcattggcc 79
>RF00258;mir-130;AAWZ01039186.1/8009-8092 28377:Anolis
carolinensis (green anole)
Length = 84
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 53 agcagtgcaatgttaaaagggcattggcc 81
|||||||||||||||||||||||||||||
Sbjct: 33 agcagtgcaatgttaaaagggcattggcc 5
>RF00258;mir-130;ABQF01026522.1/2438-2357 59729:Taeniopygia
guttata
Length = 82
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 53 agcagtgcaatgttaaaagggcattggcc 81
|||||||||||||||||||||||||||||
Sbjct: 50 agcagtgcaatgttaaaagggcattggcc 78
>RF00258;mir-130;AADN02025792.1/1337-1416 9031:Gallus gallus
(chicken)
Length = 80
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 53 agcagtgcaatgttaaaagggcattggcc 81
|||||||||||||||||||||||||||||
Sbjct: 47 agcagtgcaatgttaaaagggcattggcc 75
>RF00258;mir-130;AC091299.2/31403-31320 7955:Danio rerio
(zebrafish)
Length = 84
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 53 agcagtgcaatgttaaaagggcattggcc 81
|||||||||||||||||||||||||||||
Sbjct: 51 agcagtgcaatgttaaaagggcattggcc 79
>RF00258;mir-130;AANH01000530.1/26463-26380 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 84
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 53 agcagtgcaatgttaaaagggcattggcc 81
|||||||||| ||||||||||||||||||
Sbjct: 51 agcagtgcaacgttaaaagggcattggcc 79
>RF00258;mir-130;AADN02034765.1/1070-992 9031:Gallus gallus
(chicken)
Length = 79
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 53 agcagtgcaatgttaaaagggcattggc 80
||||||||||| ||||||||||||||||
Sbjct: 47 agcagtgcaatattaaaagggcattggc 74
>RF00258;mir-130;BX957246.7/158763-158685 7955:Danio rerio
(zebrafish)
Length = 79
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 53 agcagtgcaatgttaaaagggcattggc 80
||||||||||| ||||||||||||||||
Sbjct: 47 agcagtgcaatattaaaagggcattggc 74
>RF00258;mir-130;BX927385.15/233521-233443 7955:Danio rerio
(zebrafish)
Length = 79
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 53 agcagtgcaatgttaaaagggcattggc 80
||||||||||| ||||||||||||||||
Sbjct: 47 agcagtgcaatattaaaagggcattggc 74
>RF00258;mir-130;AANH01004639.1/10330-10408 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 79
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 53 agcagtgcaatgttaaaagggcattggc 80
||||||||||| ||||||||||||||||
Sbjct: 47 agcagtgcaatattaaaagggcattggc 74
>RF00258;mir-130;AANH01010010.1/106554-106477 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 78
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 53 agcagtgcaatgttaaaagggcattggc 80
||||||||||| ||||||||||||||||
Sbjct: 45 agcagtgcaatattaaaagggcattggc 72
>RF00258;mir-130;ACDA01000792.1/530-452 321403:Nothobranchius
kuhntae (Beira killifish)
Length = 79
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 53 agcagtgcaatgttaaaagggcattggc 80
||||||||||| ||||||||||||||||
Sbjct: 47 agcagtgcaatattaaaagggcattggc 74
>RF00258;mir-130;BAAE01282596.1/852-774 8090:Oryzias latipes
(Japanese medaka)
Length = 79
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 53 agcagtgcaatgttaaaagggcattggc 80
||||||||||| ||||||||||||||||
Sbjct: 47 agcagtgcaatattaaaagggcattggc 74
>RF00258;mir-130;AAVX01105962.1/740-661 7868:Callorhinchus milii
(ghost shark)
Length = 80
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 53 agcagtgcaatgttaaaagggcattggc 80
||||||||||| ||||||||||||||||
Sbjct: 48 agcagtgcaatattaaaagggcattggc 75
