miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00678;mir-140;ABRO01131757.1/4897-4800 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 98
Score = 155 bits (78), Expect = 1e-37
Identities = 90/94 (95%)
Strand = Plus / Plus
Query: 3 tgtctctctctgtgtcctgccagtggttctaccctatggtaggttacgtcatgctgttct 62
|||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||
Sbjct: 1 tgtctctctctgtgtcctcacagtggttttaccctatggtaggttacatcatgctgttct 60
Query: 63 accacagggtagaaccacggacaggataccgggg 96
||||||||||||||||||||||||||||||||||
Sbjct: 61 accacagggtagaaccacggacaggataccgggg 94
>RF00678;mir-140;AADN02054178.1/9586-9683 9031:Gallus gallus
(chicken)
Length = 98
Score = 149 bits (75), Expect = 8e-36
Identities = 87/91 (95%)
Strand = Plus / Plus
Query: 7 tctctctgtgtcctgccagtggttctaccctatggtaggttacgtcatgctgttctacca 66
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 5 tctctccgtgtcctgccagtggttttaccctatggtaggttacgtcatgctgttctacca 64
Query: 67 cagggtagaaccacggacaggataccggggc 97
|||||||||||||||||| |||| |||||||
Sbjct: 65 cagggtagaaccacggacgggatgccggggc 95
>RF00678;mir-140;AAVX01038725.1/2937-3034 7868:Callorhinchus milii
(ghost shark)
Length = 98
Score = 131 bits (66), Expect = 2e-30
Identities = 75/78 (96%)
Strand = Plus / Plus
Query: 10 ctctgtgtcctgccagtggttctaccctatggtaggttacgtcatgctgttctaccacag 69
||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 8 ctctgtgacctaccagtggttttaccctatggtaggttacgtcatgctgttctaccacag 67
Query: 70 ggtagaaccacggacagg 87
||||||||||||||||||
Sbjct: 68 ggtagaaccacggacagg 85
>RF00678;mir-140;BAAF04008549.1/880-978 8090:Oryzias latipes
(Japanese medaka)
Length = 99
Score = 101 bits (51), Expect = 2e-21
Identities = 63/67 (94%)
Strand = Plus / Plus
Query: 23 cagtggttctaccctatggtaggttacgtcatgctgttctaccacagggtagaaccacgg 82
|||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 22 cagtggttttaccctatggtaggtgacatcatgctgttctaccacagggtagaaccacgg 81
Query: 83 acaggat 89
|| ||||
Sbjct: 82 acgggat 88
