miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00682;mir-144;AAGU02141945.1/2203-2119 9785:Loxodonta africana
(African savanna elephant)
Length = 85
Score = 157 bits (79), Expect = 3e-38
Identities = 82/83 (98%)
Strand = Plus / Plus
Query: 3 gggccctggctgggatatcatcatatactgtaagtttgtgatgagacactacagtataga 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 gggccctggctgggatatcatcatatactgtaagtttgtgatgagacactacagtataga 62
Query: 63 tgatgtactagtccgggcacccc 85
||||||||||||||||| |||||
Sbjct: 63 tgatgtactagtccgggtacccc 85
>RF00682;mir-144;AAFR03044825.1/5551-5467 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 85
Score = 99.6 bits (50), Expect = 6e-21
Identities = 65/70 (92%)
Strand = Plus / Plus
Query: 2 ggggccctggctgggatatcatcatatactgtaagtttgtgatgagacactacagtatag 61
||||||| ||| ||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct: 2 ggggcccaggccgggatatcatcgtatactgtaagtttgcaatgagacactacagtatag 61
Query: 62 atgatgtact 71
||||||||||
Sbjct: 62 atgatgtact 71
>RF00682;mir-144;ABQO010853698.1/933-849 9315:Macropus eugenii
(tammar wallaby)
Length = 85
Score = 93.7 bits (47), Expect = 3e-19
Identities = 62/67 (92%)
Strand = Plus / Plus
Query: 5 gccctggctgggatatcatcatatactgtaagtttgtgatgagacactacagtatagatg 64
|||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct: 5 gccctggccaggatatcatcgtatactgtaagtttgcaatgagacactacagtatagatg 64
Query: 65 atgtact 71
|||||||
Sbjct: 65 atgtact 71
>RF00682;mir-144;ABQF01026376.1/1068-984 59729:Taeniopygia guttata
Length = 85
Score = 81.8 bits (41), Expect = 1e-15
Identities = 53/57 (92%)
Strand = Plus / Plus
Query: 15 ggatatcatcatatactgtaagtttgtgatgagacactacagtatagatgatgtact 71
|||||||||| ||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 15 ggatatcatcgtatactgtaagttggctatgagacactacagtatagatgatgtact 71
>RF00682;mir-144;AADN02025858.1/339-423 9031:Gallus gallus
(chicken)
Length = 85
Score = 81.8 bits (41), Expect = 1e-15
Identities = 53/57 (92%)
Strand = Plus / Plus
Query: 15 ggatatcatcatatactgtaagtttgtgatgagacactacagtatagatgatgtact 71
|||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 15 ggatatcatcatatactgtaagttcactatgagacactacagtatagatgatgtact 71
>RF00682;mir-144;BC152081.1/387-472 7955:Danio rerio (zebrafish)
Length = 86
Score = 69.9 bits (35), Expect = 5e-12
Identities = 54/59 (91%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 15 ggatatcatcatatactgtaagtttgtgat-gagacactacagtatagatgatgtacta 72
|||||||||| ||||||||||||| | || ||||||||||||||||||||||||||||
Sbjct: 15 ggatatcatcgtatactgtaagttcattattgagacactacagtatagatgatgtacta 73
>RF00682;mir-144;BAAF04033966.1/3629-3714 8090:Oryzias latipes
(Japanese medaka)
Length = 86
Score = 69.9 bits (35), Expect = 5e-12
Identities = 54/59 (91%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 15 ggatatcatcatatactgtaagtttg-tgatgagacactacagtatagatgatgtacta 72
|||||||||| |||||||||||||| | | ||||||||||||||||||||||||||||
Sbjct: 15 ggatatcatcttatactgtaagtttaataaagagacactacagtatagatgatgtacta 73
>RF00682;mir-144;AAVX01587350.1/53-138 7868:Callorhinchus milii
(ghost shark)
Length = 86
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 46 agacactacagtatagatgatgtacta 72
|||||||||||||||||||||||||||
Sbjct: 47 agacactacagtatagatgatgtacta 73
