miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00675;mir-145;ABRQ01509527.1/1427-1341 9813:Procavia capensis
(cape rock hyrax)
Length = 87
Score = 157 bits (79), Expect = 3e-38
Identities = 85/87 (97%)
Strand = Plus / Plus
Query: 1 caccttgtcctcacggtccagttttcccaggaatcccttaaatgctaagatggggattcc 60
|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct: 1 caccttgtcctcacggtccagttttcccaggaatcccttacatgctaagacggggattcc 60
Query: 61 tggaaatactgttcttgaggtcatggt 87
|||||||||||||||||||||||||||
Sbjct: 61 tggaaatactgttcttgaggtcatggt 87
>RF00675;mir-145;AAGW01611070.1/1144-1232 9986:Oryctolagus
cuniculus (rabbit)
Length = 89
Score = 151 bits (76), Expect = 2e-36
Identities = 85/88 (96%)
Strand = Plus / Plus
Query: 1 caccttgtcctcacggtccagttttcccaggaatcccttaaatgctaagatggggattcc 60
|||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 2 caccttgtcctcggggtccagttttcccaggaatcccttagatgctaagatggggattcc 61
Query: 61 tggaaatactgttcttgaggtcatggtt 88
||||||||||||||||||||||||||||
Sbjct: 62 tggaaatactgttcttgaggtcatggtt 89
>RF00675;mir-145;AAWZ01000591.1/17482-17570 28377:Anolis
carolinensis (green anole)
Length = 89
Score = 113 bits (57), Expect = 4e-25
Identities = 75/81 (92%)
Strand = Plus / Plus
Query: 6 tgtcctcacggtccagttttcccaggaatcccttaaatgctaagatggggattcctggaa 65
||||||| |||||||||||||||||||||||||| ||| ||||| ||||||||||||||
Sbjct: 7 tgtcctcggggtccagttttcccaggaatcccttagatgataagagggggattcctggaa 66
Query: 66 atactgttcttgaggtcatgg 86
|||||||||||| ||||||||
Sbjct: 67 atactgttcttggggtcatgg 87
>RF00675;mir-145;AANG01343499.1/5356-5446 9685:Felis catus
(domestic cat)
Length = 91
Score = 109 bits (55), Expect = 6e-24
Identities = 79/83 (95%), Gaps = 3/83 (3%)
Strand = Plus / Plus
Query: 9 cctcacggtccagtttt-cccaggaatcccttaaatgctaagat-ggggatt-cctggaa 65
||||||||||||||||| ||||||||||||||| |||||||||| ||||||| |||||||
Sbjct: 9 cctcacggtccagtttttcccaggaatcccttagatgctaagatgggggattccctggaa 68
Query: 66 atactgttcttgaggtcatggtt 88
|||||||||||||||||||||||
Sbjct: 69 atactgttcttgaggtcatggtt 91
>RF00675;mir-145;CT029999.12/82723-82635 7955:Danio rerio
(zebrafish)
Length = 89
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 52 ggggattcctggaaatactgttcttg 77
||||||||||||||||||||||||||
Sbjct: 53 ggggattcctggaaatactgttcttg 78
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 ggtccagttttcccaggaatccctt 39
|||||||||||||||||||||||||
Sbjct: 15 ggtccagttttcccaggaatccctt 39
>RF00675;mir-145;AANH01007327.1/2171-2260 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 90
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 52 ggggattcctggaaatactgttcttg 77
||||||||||||||||||||||||||
Sbjct: 54 ggggattcctggaaatactgttcttg 79
>RF00675;mir-145;BAAF04072768.1/17019-16930 8090:Oryzias latipes
(Japanese medaka)
Length = 90
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 ggtccagttttcccaggaatccctt 39
|||||||||||||||||||||||||
Sbjct: 15 ggtccagttttcccaggaatccctt 39
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 52 ggggattcctggaaatactgttcttg 77
|||||||||||||||||||| |||||
Sbjct: 54 ggggattcctggaaatactgatcttg 79
