miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00693;mir-147;AANU01202048.1/11100-11029 9544:Macaca mulatta
(rhesus monkey)
Length = 72
Score = 143 bits (72), Expect = 3e-34
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 1 aatctaaagaaaacatttctgcacacacaccagactattgaagccagtgtgtggaaatgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aatctaaagaaaacatttctgcacacacaccagactattgaagccagtgtgtggaaatgc 60
Query: 61 ttctgctacatt 72
||||||||||||
Sbjct: 61 ttctgctacatt 72
>RF00693;mir-147;ABRN01322131.1/5297-5220 9739:Tursiops truncatus
(bottlenosed dolphin)
Length = 78
Score = 73.8 bits (37), Expect = 3e-13
Identities = 43/45 (95%)
Strand = Plus / Plus
Query: 28 caccagactattgaagccagtgtgtggaaatgcttctgctacatt 72
||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct: 34 caccagactattgaaaccagtgtgtggaaatgcttctgttacatt 78
>RF00693;mir-147;AAGV020206622.1/526-457 9361:Dasypus novemcinctus
(nine-banded armadillo)
Length = 70
Score = 71.9 bits (36), Expect = 1e-12
Identities = 45/48 (93%)
Strand = Plus / Plus
Query: 25 acacaccagactattgaagccagtgtgtggaaatgcttctgctacatt 72
|||||||||||||||||| |||| ||||| ||||||||||||||||||
Sbjct: 23 acacaccagactattgaaaccagcgtgtgaaaatgcttctgctacatt 70
>RF00693;mir-147;AAKN02005203.1/37099-37168 10141:Cavia porcellus
(domestic guinea pig)
Length = 70
Score = 69.9 bits (35), Expect = 4e-12
Identities = 62/70 (88%), Gaps = 2/70 (2%)
Strand = Plus / Plus
Query: 3 tctaaagaaaacatttctgcacacacaccagactattgaagccagtgtgtggaaatgctt 62
|||| |||||||||||||||||| || |||||||||||| |||||||| || ||||||
Sbjct: 3 tctacagaaaacatttctgcacaaac--cagactattgaatccagtgtggggcgatgctt 60
Query: 63 ctgctacatt 72
||||||||||
Sbjct: 61 ctgctacatt 70
>RF00693;mir-147;ABDC01001199.1/1794-1723 30608:Microcebus murinus
(gray mouse lemur)
Length = 72
Score = 63.9 bits (32), Expect = 2e-10
Identities = 53/60 (88%)
Strand = Plus / Plus
Query: 8 agaaaacatttctgcacacacaccagactattgaagccagtgtgtggaaatgcttctgct 67
||||||| ||||||| ||||| |||||||| ||| ||| ||||||||||||||||||||
Sbjct: 8 agaaaacgtttctgcgcacaccccagactaccgaaaccaatgtgtggaaatgcttctgct 67
>RF00693;mir-147;AACN010573528.1/732-801 9615:Canis lupus
familiaris (dog)
Length = 70
Score = 58.0 bits (29), Expect = 2e-08
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 24 cacacaccagactattgaagccagtgtgtggaaatgcttctgctacatt 72
||||||||||||||||||| ||| |||||||||||||| ||||||||
Sbjct: 22 cacacaccagactattgaaatcagcgtgtggaaatgctttcgctacatt 70
>RF00693;mir-147;ACBE01108147.1/7076-7008 9685:Felis catus
(domestic cat)
Length = 69
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 44 ccagtgtgtggaaatgcttctgctaca 70
|||||||||||||||||||||||||||
Sbjct: 41 ccagtgtgtggaaatgcttctgctaca 67
>RF00693;mir-147;ABRP01017253.1/4570-4501 132908:Pteropus vampyrus
(large flying fox)
Length = 70
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 46 agtgtgtggaaatgcttctgctacat 71
||||||||||||||||||||||||||
Sbjct: 44 agtgtgtggaaatgcttctgctacat 69
>RF00693;mir-147;ABRN01165333.1/9979-9911 9739:Tursiops truncatus
(bottlenosed dolphin)
Length = 69
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 44 ccagtgtgtggaaatgcttctgcta 68
|||||||||||||||||||||||||
Sbjct: 41 ccagtgtgtggaaatgcttctgcta 65
>RF00693;mir-147;AAGW01139212.1/2371-2440 9986:Oryctolagus
cuniculus (rabbit)
Length = 70
Score = 50.1 bits (25), Expect = 4e-06
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 24 cacacaccagactattgaagccagtgtgtggaaatgcttctgctacatt 72
||||||||||||||||| | ||||||| ||||||||||| | ||||||
Sbjct: 22 cacacaccagactattgcaagcagtgtgcggaaatgcttccgttacatt 70
>RF00693;mir-147;BX934528.1/415-484 9031:Gallus gallus (chicken)
Length = 70
Score = 48.1 bits (24), Expect = 1e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 45 cagtgtgtggaaatgcttctgctacatt 72
||||||| ||||||||||||||||||||
Sbjct: 43 cagtgtgcggaaatgcttctgctacatt 70
>RF00693;mir-147;ABQO010540357.1/344-413 9315:Macropus eugenii
(tammar wallaby)
Length = 70
Score = 46.1 bits (23), Expect = 6e-05
Identities = 53/62 (85%), Gaps = 2/62 (3%)
Strand = Plus / Plus
Query: 11 aaacatttctgcacacacaccagactattgaagccagtgtgtggaaatgcttctgctaca 70
|||||||||||||||||| | |||| |||| |||||||| ||| |||||||||||||
Sbjct: 11 aaacatttctgcacacact--atactactgaaaccagtgtgcagaagtgcttctgctaca 68
Query: 71 tt 72
||
Sbjct: 69 tt 70
>RF00693;mir-147;AALT01554324.1/2524-2592 42254:Sorex araneus
(European shrew)
Length = 69
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 44 ccagtgtgtggaaatgcttctgctaca 70
||||||| |||||||||||||||||||
Sbjct: 41 ccagtgtatggaaatgcttctgctaca 67
>RF00693;mir-147;AAHX01006722.1/12190-12258 10116:Rattus
norvegicus (Norway rat)
Length = 69
Score = 46.1 bits (23), Expect = 6e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 38 ttgaagccagtgtgtggaaatgcttctgctacatt 72
|||| ||||||||| |||||||||||||||||||
Sbjct: 35 ttgatgccagtgtgcagaaatgcttctgctacatt 69
>RF00693;mir-147;AAFR03008278.1/59401-59332 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 70
Score = 42.1 bits (21), Expect = 9e-04
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 32 agactattgaagccagtgtgtggaaatgcttctgctacatt 72
|||||| |||| |||||||| ||| |||||||||||||||
Sbjct: 30 agactactgaaaccagtgtgcagaagtgcttctgctacatt 70
>RF00693;mir-147;ABRP01288637.1/1022-964 132908:Pteropus vampyrus
(large flying fox)
Length = 59
Score = 42.1 bits (21), Expect = 9e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 23 acacacaccagactattgaagccag 47
|||||||||||||||| ||||||||
Sbjct: 21 acacacaccagactatggaagccag 45
>RF00693;mir-147;AAPY01498171.1/7435-7366 37347:Tupaia belangeri
(northern tree shrew)
Length = 70
Score = 42.1 bits (21), Expect = 9e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 48 tgtgtggaaatgcttctgctacatt 72
|||||||||||||||||||| ||||
Sbjct: 46 tgtgtggaaatgcttctgctgcatt 70
>RF00693;mir-147;AAQR01094649.1/6332-6264 30611:Otolemur garnettii
(small-eared galago)
Length = 69
Score = 42.1 bits (21), Expect = 9e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 44 ccagtgtgtggaaatgcttctgcta 68
|||||||| ||||||||||||||||
Sbjct: 41 ccagtgtgaggaaatgcttctgcta 65
