miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00650;mir-153;ABRQ01035369.1/2287-2202 9813:Procavia capensis
(cape rock hyrax)
Length = 86
Score = 170 bits (86), Expect = 2e-42
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 3 cacagctgccagtgtcatttttgtgatctgcagctagtattctcactccagttgcatagt 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cacagctgccagtgtcatttttgtgatctgcagctagtattctcactccagttgcatagt 60
Query: 63 cacaaaagtgatcattggcaggtgtg 88
||||||||||||||||||||||||||
Sbjct: 61 cacaaaagtgatcattggcaggtgtg 86
>RF00650;mir-153;ABQF01010730.1/5361-5446 59729:Taeniopygia
guttata
Length = 86
Score = 101 bits (51), Expect = 1e-21
Identities = 72/79 (91%)
Strand = Plus / Plus
Query: 5 cagctgccagtgtcatttttgtgatctgcagctagtattctcactccagttgcatagtca 64
|||||||| | |||||||||||||| ||||||||||| ||| |||||||||||||||||
Sbjct: 3 cagctgccggcgtcatttttgtgatttgcagctagtaatctggctccagttgcatagtca 62
Query: 65 caaaagtgatcattggcag 83
||||||||||| |||||||
Sbjct: 63 caaaagtgatcgttggcag 81
>RF00650;mir-153;BAAF04013663.1/2456-2371 8090:Oryzias latipes
(Japanese medaka)
Length = 86
Score = 99.6 bits (50), Expect = 6e-21
Identities = 71/78 (91%)
Strand = Plus / Plus
Query: 11 ccagtgtcatttttgtgatctgcagctagtattctcactccagttgcatagtcacaaaag 70
||||||||||||||||| | ||||||||||| ||| ||||||||||||||||||||||
Sbjct: 9 ccagtgtcatttttgtggtttgcagctagtactctggctccagttgcatagtcacaaaaa 68
Query: 71 tgatcattggcaggtgtg 88
||| ||||||||||||||
Sbjct: 69 tgagcattggcaggtgtg 86
>RF00650;mir-153;AAWZ01013157.1/56717-56632 28377:Anolis
carolinensis (green anole)
Length = 86
Score = 85.7 bits (43), Expect = 9e-17
Identities = 70/79 (88%)
Strand = Plus / Plus
Query: 3 cacagctgccagtgtcatttttgtgatctgcagctagtattctcactccagttgcatagt 62
|||||| | |||||||||||||||||| ||||||||||| || |||||||||||||
Sbjct: 1 cacagccgtcagtgtcatttttgtgatttgcagctagtaatcctggcccagttgcatagt 60
Query: 63 cacaaaagtgatcattggc 81
|||||||||||||||||||
Sbjct: 61 cacaaaagtgatcattggc 79
>RF00650;mir-153;BAAE01047906.1/23-109 8090:Oryzias latipes
(Japanese medaka)
Length = 87
Score = 81.8 bits (41), Expect = 1e-15
Identities = 66/73 (90%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 9 tgccagtgtcatttttgtgatct-gcagctagtattctcactccagttgcatagtcacaa 67
||||||||||||||||||||| | |||||||||| | | | ||||||||||||||||||
Sbjct: 7 tgccagtgtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaa 66
Query: 68 aagtgatcattgg 80
|||||||||||||
Sbjct: 67 aagtgatcattgg 79
>RF00650;mir-153;BX323042.7/121254-121169 7955:Danio rerio
(zebrafish)
Length = 86
Score = 69.9 bits (35), Expect = 5e-12
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 3 cacagctgccagtgtcatttttgtgatctgcagctagtattctcactccagttgcatagt 62
|||||||| | |||||||||||||| | ||||||||||| ||| ||||||||||||||
Sbjct: 1 cacagctgtctgtgtcatttttgtggtttgcagctagtagtctggttccagttgcatagt 60
Query: 63 cacaaaa 69
|||||||
Sbjct: 61 cacaaaa 67
>RF00650;mir-153;AANH01011406.1/2584-2499 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 86
Score = 63.9 bits (32), Expect = 3e-10
Identities = 56/64 (87%)
Strand = Plus / Plus
Query: 14 gtgtcatttttgtgatctgcagctagtattctcactccagttgcatagtcacaaaagtga 73
|||||||| ||||| | |||| |||||| ||| |||||||||||||||||||||| |||
Sbjct: 12 gtgtcattcttgtggtttgcaactagtagtctggctccagttgcatagtcacaaaaatga 71
Query: 74 tcat 77
||||
Sbjct: 72 tcat 75
>RF00650;mir-153;AAGJ02018792.1/5926-5834 7668:Strongylocentrotus
purpuratus
Length = 93
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 52 agttgcatagtcacaaaagtgat 74
|||||||||||||||||||||||
Sbjct: 59 agttgcatagtcacaaaagtgat 81
>RF00650;mir-153;AABS01000027.1/231997-232081 7719:Ciona
intestinalis
Length = 85
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 52 agttgcatagtcacaaaagtgatcat 77
||||||||||| ||||||||||||||
Sbjct: 49 agttgcatagtaacaaaagtgatcat 74
