miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00641;mir-154;ABRQ01054377.1/1437-1516 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 151 bits (76), Expect = 2e-36
Identities = 79/80 (98%)
Strand = Plus / Plus
Query: 3 ggtacttgaagataggttatccgtgttgccttcgctttatttgtgacgaatcatacacgg 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtacttgaagataggttatccgtgttgccttcgctttatttgtgacgaatcatacacgg 60
Query: 63 ttgacctatttttcagtacc 82
|| |||||||||||||||||
Sbjct: 61 ttcacctatttttcagtacc 80
>RF00641;mir-154;ABRT010163757.1/310-389 9478:Tarsius syrichta
(Philippine tarsier)
Length = 80
Score = 97.6 bits (49), Expect = 2e-20
Identities = 70/77 (90%)
Strand = Plus / Plus
Query: 6 acttgaagataggttatccgtgttgccttcgctttatttgtgacgaatcatacacggttg 65
|||||||||||||||||||||||||||||| || |||||||||||||||||||| | ||
Sbjct: 4 acttgaagataggttatccgtgttgccttcaattgatttgtgacgaatcatacacagctg 63
Query: 66 acctatttttcagtacc 82
|| || |||||||||||
Sbjct: 64 acgtacttttcagtacc 80
>RF00641;mir-154;ACBE01216515.1/5359-5280 9685:Felis catus
(domestic cat)
Length = 80
Score = 71.9 bits (36), Expect = 1e-12
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 15 taggttatccgtgttgccttcgctttatttgtgacgaatcatacacggttgacctatttt 74
||||||||||||||||||||| || |||||||||| ||||||||| ||| |||||||||
Sbjct: 13 taggttatccgtgttgccttcactcgatttgtgacgcatcatacaccgttcacctatttt 72
>RF00641;mir-154;ABRN01448853.1/6300-6378 9739:Tursiops truncatus
(bottlenosed dolphin)
Length = 79
Score = 58.0 bits (29), Expect = 2e-08
Identities = 63/73 (86%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 4 gtacttgaagataggttatccgtgttgccttcgctttatttgt-gacgaatcatacacgg 62
||||||||||| |||| ||| || ||| |||||||||||| | ||||||||||||| ||
Sbjct: 1 gtacttgaagagaggtcttccatggtgcattcgctttattttttgacgaatcatacatgg 60
Query: 63 ttgacctattttt 75
||||||| |||||
Sbjct: 61 ttgaccttttttt 73
>RF00641;mir-154;ABRQ01054375.1/598-677 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 58.0 bits (29), Expect = 2e-08
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 3 ggtacttgaagataggttatccgtgttgccttcgctttatttgtgacgaatcataca 59
|||||||||||| |||||||| || || |||||||||||| ||||||||||||||
Sbjct: 1 ggtacttgaagagtggttatccctgctgtgttcgctttatttatgacgaatcataca 57
>RF00641;mir-154;ABRP01151524.1/15711-15789 132908:Pteropus
vampyrus (large flying fox)
Length = 79
Score = 56.0 bits (28), Expect = 7e-08
Identities = 61/72 (84%)
Strand = Plus / Plus
Query: 11 aagataggttatccgtgttgccttcgctttatttgtgacgaatcatacacggttgaccta 70
|||||||||| | ||||||||||| |||||||| || |||||||||||||| | ||
Sbjct: 8 aagataggttctttgtgttgccttcattttatttgcgatgaatcatacacggtgtgctta 67
Query: 71 tttttcagtacc 82
||||||||||||
Sbjct: 68 tttttcagtacc 79
>RF00641;mir-154;AAPE01468961.1/2426-2505 59463:Myotis lucifugus
(little brown bat)
Length = 80
Score = 54.0 bits (27), Expect = 3e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 12 agataggttatccgtgttgccttcgctttatttgt 46
|||| ||||||||||||||||||| ||||||||||
Sbjct: 10 agatgggttatccgtgttgccttcactttatttgt 44
>RF00641;mir-154;AAEX02019639.1/142350-142427 9615:Canis lupus
familiaris (dog)
Length = 78
Score = 44.1 bits (22), Expect = 3e-04
Identities = 44/50 (88%), Gaps = 1/50 (2%)
Strand = Plus / Plus
Query: 3 ggtacttgaagataggttatccgtgttgccttcgctttatttgtgacgaa 52
|||||| ||| | |||||||||||||| | |||||||||||| |||||||
Sbjct: 1 ggtactagaaaagaggttatccgtgtttc-ttcgctttatttatgacgaa 49
