miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00076;mir-181;ABRQ01199017.1/7675-7601 9813:Procavia capensis
(cape rock hyrax)
Length = 75
Score = 123 bits (62), Expect = 5e-28
Identities = 62/62 (100%)
Strand = Plus / Plus
Query: 38 gaacattcaacgctgtcggtgagtttgggatttgaaaaaaccactgaccgttgactgtac 97
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 gaacattcaacgctgtcggtgagtttgggatttgaaaaaaccactgaccgttgactgtac 68
Query: 98 ct 99
||
Sbjct: 69 ct 70
>RF00076;mir-181;ABRR01288494.1/77-2 30538:Lama pacos (alpaca)
Length = 76
Score = 111 bits (56), Expect = 2e-24
Identities = 59/60 (98%)
Strand = Plus / Plus
Query: 31 ctccaaggaacattcaacgctgtcggtgagtttgggatttgaaaaaaccactgaccgttg 90
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1 ctccaaggaacattcaacgctgtcggtgagtttgggatttgaaaaaaccaccgaccgttg 60
>RF00076;mir-181;ABRO01503714.1/705-629 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 77
Score = 81.8 bits (41), Expect = 2e-15
Identities = 64/71 (90%), Gaps = 3/71 (4%)
Strand = Plus / Plus
Query: 32 tccaaggaacattcaacgctgtcggtgagtttgggatttgaaa---aaaccactgaccgt 88
|||| ||||||||||||||||||||||||||||||| || ||| ||||||| ||||||
Sbjct: 2 tccatggaacattcaacgctgtcggtgagtttgggaattaaaaaagaaaccaccgaccgt 61
Query: 89 tgactgtacct 99
|||||||||||
Sbjct: 62 tgactgtacct 72
>RF00076;mir-181;AAVX01524458.1/119-46 7868:Callorhinchus milii
(ghost shark)
Length = 74
Score = 73.8 bits (37), Expect = 4e-13
Identities = 55/61 (90%)
Strand = Plus / Plus
Query: 38 gaacattcaacgctgtcggtgagtttgggatttgaaaaaaccactgaccgttgactgtac 97
||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||
Sbjct: 8 gaacattcaacgctgtcggtgagtttgggatttagatgaaccatcgaccgttgactgtac 67
Query: 98 c 98
|
Sbjct: 68 c 68
>RF00076;mir-181;AANH01010005.1/225761-225835 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 75
Score = 67.9 bits (34), Expect = 3e-11
Identities = 56/62 (90%), Gaps = 1/62 (1%)
Strand = Plus / Plus
Query: 38 gaacattcaacgctgtcggtgagtttgggatttga-aaaaaccactgaccgttgactgta 96
||||||||||||||||||||||||||| | ||||| ||||||| ||||||||||||||
Sbjct: 8 gaacattcaacgctgtcggtgagtttgagctttgaccaaaaccatcgaccgttgactgta 67
Query: 97 cc 98
||
Sbjct: 68 cc 69
>RF00076;mir-181;AAPN01414527.1/5237-5163 9258:Ornithorhynchus
anatinus (platypus)
Length = 75
Score = 63.9 bits (32), Expect = 4e-10
Identities = 57/64 (89%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 37 ggaacattcaacgctgtcggtgagtttgggat-ttgaaaaaaccactgaccgttgactgt 95
|||||||||||||||||||||||||||| ||| ||| |||||| |||||||||||||
Sbjct: 7 ggaacattcaacgctgtcggtgagtttgagatagagaagaaaccatcgaccgttgactgt 66
Query: 96 acct 99
||||
Sbjct: 67 acct 70
>RF00076;mir-181;AADN02026326.1/5940-5866 9031:Gallus gallus
(chicken)
Length = 75
Score = 61.9 bits (31), Expect = 2e-09
Identities = 56/63 (88%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 38 gaacattcaacgctgtcggtgagtttgggatttga-aaaaaccactgaccgttgactgta 96
||||||||||||||||||||||||||| || | | |||||||| ||||||||||||||
Sbjct: 8 gaacattcaacgctgtcggtgagtttgagaactaagaaaaaccatcgaccgttgactgta 67
Query: 97 cct 99
|||
Sbjct: 68 cct 70
>RF00076;mir-181;BAAE01247698.1/2692-2765 8090:Oryzias latipes
(Japanese medaka)
Length = 74
Score = 61.9 bits (31), Expect = 2e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 34 caaggaacattcaacgctgtcggtgagtttg 64
|||||||||||||||||||||||||||||||
Sbjct: 4 caaggaacattcaacgctgtcggtgagtttg 34
>RF00076;mir-181;AAPN01204145.1/856-780 9258:Ornithorhynchus
anatinus (platypus)
Length = 77
Score = 60.0 bits (30), Expect = 6e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 37 ggaacattcaacgctgtcggtgagtttggg 66
||||||||||||||||||||||||||||||
Sbjct: 7 ggaacattcaacgctgtcggtgagtttggg 36
>RF00076;mir-181;CAAE01007782.1/1794-1718 99883:Tetraodon
nigroviridis
Length = 77
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 37 ggaacattcaacgctgtcggtgagtttgg 65
|||||||||||||||||||||||||||||
Sbjct: 7 ggaacattcaacgctgtcggtgagtttgg 35
>RF00076;mir-181;ABQO010301058.1/1056-1132 9315:Macropus eugenii
(tammar wallaby)
Length = 77
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 37 ggaacattcaacgctgtcggtgagtttg 64
||||||||||||||||||||||||||||
Sbjct: 7 ggaacattcaacgctgtcggtgagtttg 34
>RF00076;mir-181;AAWZ01041904.1/21191-21117 28377:Anolis
carolinensis (green anole)
Length = 75
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 38 gaacattcaacgctgtcggtgagtttgg 65
||||||||||||||||||||||||||||
Sbjct: 8 gaacattcaacgctgtcggtgagtttgg 35
>RF00076;mir-181;ABQF01033784.1/94537-94612 59729:Taeniopygia
guttata
Length = 76
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 38 gaacattcaacgctgtcggtgagtttgg 65
||||||||||||||||||||||||||||
Sbjct: 8 gaacattcaacgctgtcggtgagtttgg 35
>RF00076;mir-181;AANH01011358.1/4650-4577 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 74
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 37 ggaacattcaacgctgtcggtgagtttg 64
||||||||||||||||||||||||||||
Sbjct: 7 ggaacattcaacgctgtcggtgagtttg 34
>RF00076;mir-181;BAAE01046132.1/387-313 8090:Oryzias latipes
(Japanese medaka)
Length = 75
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 37 ggaacattcaacgctgtcggtgagtttg 64
||||||||||||||||||||||||||||
Sbjct: 7 ggaacattcaacgctgtcggtgagtttg 34
>RF00076;mir-181;AAVX01605662.1/457-382 7868:Callorhinchus milii
(ghost shark)
Length = 76
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 37 ggaacattcaacgctgtcggtgagtttg 64
||||||||||||||||||||||||||||
Sbjct: 7 ggaacattcaacgctgtcggtgagtttg 34
>RF00076;mir-181;BX649502.4/41327-41254 7955:Danio rerio
(zebrafish)
Length = 74
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 38 gaacattcaacgctgtcggtgagtttg 64
|||||||||||||||||||||||||||
Sbjct: 8 gaacattcaacgctgtcggtgagtttg 34
>RF00076;mir-181;CAAK05046427.1/2246-2169 7955:Danio rerio
(zebrafish)
Length = 78
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 38 gaacattcaacgctgtcggtgagtttg 64
|||||||||||||||||||||||||||
Sbjct: 8 gaacattcaacgctgtcggtgagtttg 34
>RF00076;mir-181;CAAE01007899.1/3116-3043 99883:Tetraodon
nigroviridis
Length = 74
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 38 gaacattcaacgctgtcggtgagtttg 64
|||||||||||||||||||||||||||
Sbjct: 8 gaacattcaacgctgtcggtgagtttg 34
>RF00076;mir-181;CAAB01002581.1/17658-17586 31033:Takifugu
rubripes
Length = 73
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 37 ggaacattcaacgctgtcggtgagttt 63
|||||||||||||||||||||||||||
Sbjct: 7 ggaacattcaacgctgtcggtgagttt 33
>RF00076;mir-181;ABPN01054789.1/181-255 163638:Rhamphochromis esox
Length = 75
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 38 gaacattcaacgctgtcggtgagtttg 64
|||||||||||||||||||||||||||
Sbjct: 8 gaacattcaacgctgtcggtgagtttg 34
>RF00076;mir-181;BAAE01064819.1/183-106 8090:Oryzias latipes
(Japanese medaka)
Length = 78
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 38 gaacattcaacgctgtcggtgagtttg 64
|||||||||||||||||||||||||||
Sbjct: 8 gaacattcaacgctgtcggtgagtttg 34
>RF00076;mir-181;BAAE01266276.1/154-232 8090:Oryzias latipes
(Japanese medaka)
Length = 79
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 39 aacattcaacgctgtcggtgagtttgg 65
|||||||||||||||||||||||||||
Sbjct: 9 aacattcaacgctgtcggtgagtttgg 35
>RF00076;mir-181;AAVX01060902.1/6914-6990 7868:Callorhinchus milii
(ghost shark)
Length = 77
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 38 gaacattcaacgctgtcggtgagtttg 64
|||||||||||||||||||||||||||
Sbjct: 8 gaacattcaacgctgtcggtgagtttg 34
>RF00076;mir-181;AAFR03041358.1/50589-50664 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 76
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 38 gaacattcaacgctgtcggtgagttt 63
||||||||||||||||||||||||||
Sbjct: 8 gaacattcaacgctgtcggtgagttt 33
>RF00076;mir-181;CR407590.7/46720-46647 7955:Danio rerio
(zebrafish)
Length = 74
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 38 gaacattcaacgctgtcggtgagttt 63
||||||||||||||||||||||||||
Sbjct: 8 gaacattcaacgctgtcggtgagttt 33
>RF00076;mir-181;CU914488.12/799-875 7955:Danio rerio (zebrafish)
Length = 77
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 38 gaacattcaacgctgtcggtgagttt 63
||||||||||||||||||||||||||
Sbjct: 8 gaacattcaacgctgtcggtgagttt 33
>RF00076;mir-181;AANH01003633.1/162880-162804 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 77
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 38 gaacattcaacgctgtcggtgagttt 63
||||||||||||||||||||||||||
Sbjct: 8 gaacattcaacgctgtcggtgagttt 33
>RF00076;mir-181;AANH01005494.1/52551-52630 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 80
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 38 gaacattcaacgctgtcggtgagttt 63
||||||||||||||||||||||||||
Sbjct: 8 gaacattcaacgctgtcggtgagttt 33
>RF00076;mir-181;AAWZ01014044.1/10482-10407 28377:Anolis
carolinensis (green anole)
Length = 76
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 39 aacattcaacgctgtcggtgagttt 63
|||||||||||||||||||||||||
Sbjct: 9 aacattcaacgctgtcggtgagttt 33
>RF00076;mir-181;CAAB01009059.1/35-115 31033:Takifugu rubripes
Length = 81
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 39 aacattcaacgctgtcggtgagttt 63
|||||||||||||||||||||||||
Sbjct: 9 aacattcaacgctgtcggtgagttt 33
>RF00076;mir-181;CAAB01002295.1/30499-30571 31033:Takifugu
rubripes
Length = 73
Score = 50.1 bits (25), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 38 gaacattcaacgctgtcggtgagtttg 64
|||||||||| ||||||||||||||||
Sbjct: 8 gaacattcaamgctgtcggtgagtttg 34
>RF00076;mir-181;ABRO01089478.1/2095-2021 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 75
Score = 44.1 bits (22), Expect = 4e-04
Identities = 29/30 (96%), Gaps = 1/30 (3%)
Strand = Plus / Plus
Query: 37 ggaacattcaacgctgtcggtgagtttggg 66
|||||||||||| |||||||||||||||||
Sbjct: 7 ggaacattcaac-ctgtcggtgagtttggg 35
>RF00076;mir-181;ABRQ01065895.1/818-744 9813:Procavia capensis
(cape rock hyrax)
Length = 75
Score = 44.1 bits (22), Expect = 4e-04
Identities = 29/30 (96%), Gaps = 1/30 (3%)
Strand = Plus / Plus
Query: 37 ggaacattcaacgctgtcggtgagtttggg 66
|||||||||||| |||||||||||||||||
Sbjct: 7 ggaacattcaac-ctgtcggtgagtttggg 35
