miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00663;mir-183;ABRQ01279950.1/461-562 9813:Procavia capensis (cape
rock hyrax)
Length = 102
Score = 180 bits (91), Expect = 2e-45
Identities = 94/95 (98%)
Strand = Plus / Plus
Query: 12 gactcctgttctgtgtatggcactggtagaattcactgtgaacagtctcggtcagtgaat 71
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 4 gactcctgttctgtgtatggcactggtagaattcactgtgaacagtctcagtcagtgaat 63
Query: 72 taccgaagggccataaacagagcagagacagatcc 106
|||||||||||||||||||||||||||||||||||
Sbjct: 64 taccgaagggccataaacagagcagagacagatcc 98
>RF00663;mir-183;AAVX01005658.1/413-514 7868:Callorhinchus milii
(ghost shark)
Length = 102
Score = 113 bits (57), Expect = 5e-25
Identities = 81/89 (91%)
Strand = Plus / Plus
Query: 11 tgactcctgttctgtgtatggcactggtagaattcactgtgaacagtctcggtcagtgaa 70
||||||||||||||||||||||||||||||||||||||||||| | | | ||||||||
Sbjct: 3 tgactcctgttctgtgtatggcactggtagaattcactgtgaaaacacacaatcagtgaa 62
Query: 71 ttaccgaagggccataaacagagcagaga 99
||||| ||||||||||||||||||||||
Sbjct: 63 ttaccatagggccataaacagagcagaga 91
>RF00663;mir-183;BAAF04047675.1/11891-11992 8090:Oryzias latipes
(Japanese medaka)
Length = 102
Score = 85.7 bits (43), Expect = 1e-16
Identities = 81/91 (89%), Gaps = 2/91 (2%)
Strand = Plus / Plus
Query: 14 ctcctgttctgtgtatggcactggtagaattcactgtgaacag-tctcggtcagtgaatt 72
||||| ||||||||||||||||||||||||||||||| |||| ||| ||||||||||
Sbjct: 6 ctcctattctgtgtatggcactggtagaattcactgt-cacagcactctatcagtgaatt 64
Query: 73 accgaagggccataaacagagcagagacaga 103
||| |||||||||||||||| |||||||||
Sbjct: 65 accatagggccataaacagagtagagacaga 95
>RF00663;mir-183;CAAB01003233.1/13960-13861 31033:Takifugu
rubripes
Length = 100
Score = 65.9 bits (33), Expect = 1e-10
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 14 ctcctgttctgtgtatggcactggtagaattcactgt 50
|||||||||||| ||||||||||||||||||||||||
Sbjct: 6 ctcctgttctgtttatggcactggtagaattcactgt 42
>RF00663;mir-183;CAAE01014715.1/320476-320375 99883:Tetraodon
nigroviridis
Length = 102
Score = 60.0 bits (30), Expect = 6e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 21 tctgtgtatggcactggtagaattcactgt 50
||||||||||||||||||||||||||||||
Sbjct: 13 tctgtgtatggcactggtagaattcactgt 42
>RF00663;mir-183;AABS01000291.1/71818-71726 7719:Ciona
intestinalis
Length = 93
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 24 gtgtatggcactggtagaattcactg 49
||||||||||||||||||||||||||
Sbjct: 16 gtgtatggcactggtagaattcactg 41
>RF00663;mir-183;ABEP02026797.1/6738-6838 7739:Branchiostoma
floridae (Florida lancelet)
Length = 101
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 27 tatggcactggtagaattcactg 49
|||||||||||||||||||||||
Sbjct: 19 tatggcactggtagaattcactg 41
