miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00674;mir-187;ABRT010481208.1/1422-1525 9478:Tarsius syrichta
(Philippine tarsier)
Length = 104
Score = 159 bits (80), Expect = 9e-39
Identities = 86/88 (97%)
Strand = Plus / Plus
Query: 22 gtgtgagacctcgggctacaacacaggacccgggtgctgctctgacccctcgtgtcttgt 81
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 17 gtgtgagacctcaggctacaacacaggacccgggcgctgctctgacccctcgtgtcttgt 76
Query: 82 gttgcagccggagggacgcaggtccgca 109
||||||||||||||||||||||||||||
Sbjct: 77 gttgcagccggagggacgcaggtccgca 104
>RF00674;mir-187;AAGU02088398.1/1497-1394 9785:Loxodonta africana
(African savanna elephant)
Length = 104
Score = 159 bits (80), Expect = 9e-39
Identities = 98/104 (94%)
Strand = Plus / Plus
Query: 6 ggctcactatgacacagtgtgagacctcgggctacaacacaggacccgggtgctgctctg 65
||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggctcaccatgacatggtgtgagacctcgggctacaacacaggacccgggtgctgctctg 60
Query: 66 acccctcgtgtcttgtgttgcagccggagggacgcaggtccgca 109
||||||||||||||||||||||||||| ||||| |||| |||||
Sbjct: 61 acccctcgtgtcttgtgttgcagccggggggacacaggaccgca 104
>RF00674;mir-187;AAYZ01085202.1/4617-4513 9978:Ochotona princeps
(American pika)
Length = 105
Score = 147 bits (74), Expect = 3e-35
Identities = 86/90 (95%)
Strand = Plus / Plus
Query: 15 tgacacagtgtgagacctcgggctacaacacaggacccgggtgctgctctgacccctcgt 74
|||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 11 tgacacagtgtgggacctcgggctacaacccaggacccgggcgctgctctgacccctcgt 70
Query: 75 gtcttgtgttgcagccggagggacgcaggt 104
|||||||||||||||||||||||| |||||
Sbjct: 71 gtcttgtgttgcagccggagggacacaggt 100
>RF00674;mir-187;AAEX02026401.1/29363-29466 9615:Canis lupus
familiaris (dog)
Length = 104
Score = 145 bits (73), Expect = 1e-34
Identities = 82/85 (96%)
Strand = Plus / Plus
Query: 22 gtgtgagacctcgggctacaacacaggacccgggtgctgctctgacccctcgtgtcttgt 81
|||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||
Sbjct: 17 gtgtgagacctcgggctacaacacgggacccgggcgctgctccgacccctcgtgtcttgt 76
Query: 82 gttgcagccggagggacgcaggtcc 106
|||||||||||||||||||||||||
Sbjct: 77 gttgcagccggagggacgcaggtcc 101
>RF00674;mir-187;CAAA01044840.1/745-848 10090:Mus musculus (house
mouse)
Length = 104
Score = 135 bits (68), Expect = 1e-31
Identities = 74/76 (97%)
Strand = Plus / Plus
Query: 30 cctcgggctacaacacaggacccgggtgctgctctgacccctcgtgtcttgtgttgcagc 89
|||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 25 cctcaggctacaacacaggacccgggcgctgctctgacccctcgtgtcttgtgttgcagc 84
Query: 90 cggagggacgcaggtc 105
||||||||||||||||
Sbjct: 85 cggagggacgcaggtc 100
>RF00674;mir-187;AAKN02020391.1/22749-22852 10141:Cavia porcellus
(domestic guinea pig)
Length = 104
Score = 127 bits (64), Expect = 3e-29
Identities = 85/92 (92%)
Strand = Plus / Plus
Query: 14 atgacacagtgtgagacctcgggctacaacacaggacccgggtgctgctctgacccctcg 73
|||| |||||||||| ||| |||||||||||||||||||||| |||| | ||||||||||
Sbjct: 9 atgatacagtgtgagtccttgggctacaacacaggacccgggcgctgatttgacccctcg 68
Query: 74 tgtcttgtgttgcagccggagggacgcaggtc 105
||||||||||||||||||||||||| ||||||
Sbjct: 69 tgtcttgtgttgcagccggagggacacaggtc 100
>RF00674;mir-187;AADN02008126.1/227633-227736 9031:Gallus gallus
(chicken)
Length = 104
Score = 83.8 bits (42), Expect = 4e-16
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 23 tgtgagacctcgggctacaacacaggacccgggtgctgctctgacccctcgtgtcttgtg 82
||||||||||| |||||||||||||||| ||| ||| ||||| |||||||||||||||
Sbjct: 18 tgtgagacctccggctacaacacaggacatgggagcttttctgaaccctcgtgtcttgtg 77
Query: 83 ttgcagccggaggg 96
|||||||| |||||
Sbjct: 78 ttgcagccagaggg 91
>RF00674;mir-187;AAPN01052341.1/8485-8382 9258:Ornithorhynchus
anatinus (platypus)
Length = 104
Score = 65.9 bits (33), Expect = 1e-10
Identities = 63/73 (86%)
Strand = Plus / Plus
Query: 23 tgtgagacctcgggctacaacacaggacccgggtgctgctctgacccctcgtgtcttgtg 82
||||||||||| |||||||||| ||||| | || ||| || || |||||||||||||||
Sbjct: 18 tgtgagacctccggctacaacagaggacacaggagcttttcagaaccctcgtgtcttgtg 77
Query: 83 ttgcagccggagg 95
|||||||| ||||
Sbjct: 78 ttgcagccagagg 90
>RF00674;mir-187;AAWZ01027996.1/55264-55367 28377:Anolis
carolinensis (green anole)
Length = 104
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 68 ccctcgtgtcttgtgttgcagccggaggg 96
||||||||||||||||||||||| |||||
Sbjct: 63 ccctcgtgtcttgtgttgcagccagaggg 91
