miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00129;mir-103;AADN02035922.1/14217-14140 9031:Gallus gallus
(chicken)
Length = 78
Score = 123 bits (62), Expect = 3e-28
Identities = 62/62 (100%)
Strand = Plus / Minus
Query: 1 tcatagccctgtacaatgctgcttgatccatatgcaacaaggcagcactgtaaagaagcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 tcatagccctgtacaatgctgcttgatccatatgcaacaaggcagcactgtaaagaagcc 11
Query: 61 ga 62
||
Sbjct: 10 ga 9
>RF00129;mir-103;ABRO01336156.1/1674-1751 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 78
Score = 107 bits (54), Expect = 1e-23
Identities = 60/62 (96%)
Strand = Plus / Minus
Query: 1 tcatagccctgtacaatgctgcttgatccatatgcaacaaggcagcactgtaaagaagcc 60
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct: 70 tcatagccctgtacaatgctgcttgatccacatgcaacaaggcagcactgtagagaagcc 11
Query: 61 ga 62
||
Sbjct: 10 ga 9
>RF00129;mir-103;AAVX01197460.1/556-479 7868:Callorhinchus milii
(ghost shark)
Length = 78
Score = 85.7 bits (43), Expect = 5e-17
Identities = 55/59 (93%)
Strand = Plus / Minus
Query: 1 tcatagccctgtacaatgctgcttgatccatatgcaacaaggcagcactgtaaagaagc 59
||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||
Sbjct: 70 tcatagccctgtacaatgctgcttgatccggatgctacaagtcagcactgtaaagaagc 12
>RF00129;mir-103;BX323842.8/48404-48481 7955:Danio rerio
(zebrafish)
Length = 78
Score = 79.8 bits (40), Expect = 3e-15
Identities = 52/56 (92%)
Strand = Plus / Minus
Query: 1 tcatagccctgtacaatgctgcttgatccatatgcaacaaggcagcactgtaaaga 56
|||||||||||||||||||||||||||||| || | |||||||||||| |||||||
Sbjct: 70 tcatagccctgtacaatgctgcttgatccagattccacaaggcagcaccgtaaaga 15
>RF00129;mir-103;AAGU02403797.1/4408-4485 9785:Loxodonta africana
(African savanna elephant)
Length = 78
Score = 77.8 bits (39), Expect = 1e-14
Identities = 54/59 (91%)
Strand = Plus / Minus
Query: 1 tcatagccctgtacaatgctgcttgatccatatgcaacaaggcagcactgtaaagaagc 59
|||||||||||||||||||||||||| | |||| |||||||||||||||||||||||
Sbjct: 70 tcatagccctgtacaatgctgcttgacctgaatgctacaaggcagcactgtaaagaagc 12
>RF00129;mir-103;AAVX01046194.1/322-245 7868:Callorhinchus milii
(ghost shark)
Length = 78
Score = 75.8 bits (38), Expect = 5e-14
Identities = 56/62 (90%)
Strand = Plus / Minus
Query: 1 tcatagccctgtacaatgctgcttgatccatatgcaacaaggcagcactgtaaagaagcc 60
|||||||||||||||||||||||||||| | | ||||||||||||||||||||||||
Sbjct: 70 tcatagccctgtacaatgctgcttgatcttcacgtcacaaggcagcactgtaaagaagcc 11
Query: 61 ga 62
||
Sbjct: 10 ga 9
>RF00129;mir-103;BAAE01010024.1/828-751 8090:Oryzias latipes
(Japanese medaka)
Length = 78
Score = 73.8 bits (37), Expect = 2e-13
Identities = 52/57 (91%)
Strand = Plus / Minus
Query: 3 atagccctgtacaatgctgcttgatccatatgcaacaaggcagcactgtaaagaagc 59
|||||||||||||||||||||||||| |||| |||||||| ||||||||||||||
Sbjct: 68 atagccctgtacaatgctgcttgatcgccatgccacaaggcaacactgtaaagaagc 12
>RF00129;mir-103;AANH01004124.1/31115-31038 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 78
Score = 71.9 bits (36), Expect = 8e-13
Identities = 51/56 (91%)
Strand = Plus / Minus
Query: 1 tcatagccctgtacaatgctgcttgatccatatgcaacaaggcagcactgtaaaga 56
|||||||||||||||||||||||||||| | | || |||||||||||| |||||||
Sbjct: 70 tcatagccctgtacaatgctgcttgatcgagacgccacaaggcagcaccgtaaaga 15
>RF00129;mir-103;AADN02048857.1/398-321 9031:Gallus gallus
(chicken)
Length = 78
Score = 69.9 bits (35), Expect = 3e-12
Identities = 53/59 (89%)
Strand = Plus / Minus
Query: 1 tcatagccctgtacaatgctgcttgatccatatgcaacaaggcagcactgtaaagaagc 59
|||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 70 tcatagccctgtacaatgctgcttgacatgaacgcaacaaggcagcactgtaaagaagc 12
>RF00129;mir-103;AAVX01541574.1/765-688 7868:Callorhinchus milii
(ghost shark)
Length = 78
Score = 67.9 bits (34), Expect = 1e-11
Identities = 52/58 (89%)
Strand = Plus / Minus
Query: 3 atagccctgtacaatgctgcttgatccatatgcaacaaggcagcactgtaaagaagcc 60
|||||||||||||||||||||||||| | || |||||||| |||||||||||||||
Sbjct: 68 atagccctgtacaatgctgcttgatctccaagctacaaggcaacactgtaaagaagcc 11
>RF00129;mir-103;AADN02027745.1/21215-21292 9031:Gallus gallus
(chicken)
Length = 78
Score = 65.9 bits (33), Expect = 5e-11
Identities = 51/57 (89%)
Strand = Plus / Minus
Query: 3 atagccctgtacaatgctgcttgatccatatgcaacaaggcagcactgtaaagaagc 59
|||||||||||||||||||||||| | |||| |||||||| ||||||||||||||
Sbjct: 68 atagccctgtacaatgctgcttgaactccatgccacaaggcaacactgtaaagaagc 12
>RF00129;mir-103;AANH01006686.1/13404-13327 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 78
Score = 63.9 bits (32), Expect = 2e-10
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 1 tcatagccctgtacaatgctgcttgatccatatgcaacaaggcagcactgtaaaga 56
|||||||||||||||||||||||||| || || ||||||||||||||||||||
Sbjct: 70 tcatagccctgtacaatgctgcttgaacctgatcagacaaggcagcactgtaaaga 15
>RF00129;mir-103;BAAF04068432.1/1846-1923 8090:Oryzias latipes
(Japanese medaka)
Length = 78
Score = 61.9 bits (31), Expect = 8e-10
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 1 tcatagccctgtacaatgctgcttgatccatatgcaacaaggcagca 47
|||||||||||||||||||||||||||| | | || |||||||||||
Sbjct: 70 tcatagccctgtacaatgctgcttgatcaagacgccacaaggcagca 24
>RF00129;mir-103;BX511087.12/72494-72571 7955:Danio rerio
(zebrafish)
Length = 78
Score = 56.0 bits (28), Expect = 5e-08
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 5 agccctgtacaatgctgcttgatccatatgcaacaaggcagcactgtaaagaagcc 60
|||||||||||||||||||||||| | || |||||||| ||||||| |||||||
Sbjct: 66 agccctgtacaatgctgcttgatcaccaggctacaaggcaacactgtagagaagcc 11
>RF00129;mir-103;CT573279.9/199469-199546 7955:Danio rerio
(zebrafish)
Length = 78
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 1 tcatagccctgtacaatgctgcttgat 27
|||||||||||||||||||||||||||
Sbjct: 70 tcatagccctgtacaatgctgcttgat 44
>RF00129;mir-103;BAAE01256445.1/2223-2146 8090:Oryzias latipes
(Japanese medaka)
Length = 78
Score = 52.0 bits (26), Expect = 8e-07
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 1 tcatagccctgtacaatgctgcttga 26
||||||||||||||||||||||||||
Sbjct: 70 tcatagccctgtacaatgctgcttga 45
