miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00670;mir-105;ABRO01195452.1/9888-9808 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 81
Score = 137 bits (69), Expect = 2e-32
Identities = 78/81 (96%)
Strand = Plus / Plus
Query: 1 tgtgcatcgtggtcaaatgctcagactcctgtggtggctgcttatgcaccacggatgttt 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1 tgtgcatcgtggtcaaatgctcagactcctgtggtggctgctcatgcaccacggatgttt 60
Query: 61 gagcatgtgctatggtgtcta 81
|||||| ||| ||||||||||
Sbjct: 61 gagcatatgccatggtgtcta 81
>RF00670;mir-105;AAEX02003804.1/918-997 9615:Canis lupus
familiaris (dog)
Length = 80
Score = 121 bits (61), Expect = 1e-27
Identities = 77/81 (95%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 1 tgtgcatcgtggtcaaatgctcagactcctgtggtggctgcttatgcaccacggatgttt 60
|||||||| ||||||||||||||||||||| |||||||||||||||||||| | ||||||
Sbjct: 1 tgtgcatcatggtcaaatgctcagactcct-tggtggctgcttatgcaccatgaatgttt 59
Query: 61 gagcatgtgctatggtgtcta 81
|||||||||||||||||||||
Sbjct: 60 gagcatgtgctatggtgtcta 80
>RF00670;mir-105;AAIY01029761.1/2576-2497 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 80
Score = 97.6 bits (49), Expect = 2e-20
Identities = 74/81 (91%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 1 tgtgcatcgtggtcaaatgctcagactcctgtggtggctgcttatgcaccacggatgttt 60
||||||| |||||||||||||||||||||||| ||||||| || ||||||| |||| |||
Sbjct: 1 tgtgcattgtggtcaaatgctcagactcctgttgtggctgtttgtgcaccatggat-ttt 59
Query: 61 gagcatgtgctatggtgtcta 81
||||||||||||||| |||||
Sbjct: 60 gagcatgtgctatggcgtcta 80
>RF00670;mir-105;AABR04012381.1/35187-35107 10116:Rattus
norvegicus (Norway rat)
Length = 81
Score = 83.8 bits (42), Expect = 3e-16
Identities = 63/70 (90%)
Strand = Plus / Plus
Query: 12 gtcaaatgctcagactcctgtggtggctgcttatgcaccacggatgtttgagcatgtgct 71
||||| |||||||| |||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 12 gtcaagtgctcagatgtctgtggtggctgcttatgtatcacggatgtttgagcatgtgct 71
Query: 72 atggtgtcta 81
||||| ||||
Sbjct: 72 atggtatcta 81
>RF00670;mir-105;CAAA01059274.1/4642-4722 10090:Mus musculus
(house mouse)
Length = 81
Score = 77.8 bits (39), Expect = 2e-14
Identities = 45/47 (95%)
Strand = Plus / Plus
Query: 30 tgtggtggctgcttatgcaccacggatgtttgagcatgtgctatggt 76
|||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 30 tgtggtggctgcttatgcaccacgaatgcttgagcatgtgctatggt 76
>RF00670;mir-105;AANN01683306.1/2545-2466 9365:Erinaceus europaeus
(western European hedgehog)
Length = 80
Score = 75.8 bits (38), Expect = 7e-14
Identities = 66/74 (89%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 8 cgtggtcaaatgctcagactcctgtggtggctgcttatgcaccacggatgtttgagcatg 67
||||||||||||||||| |||| ||||| | || |||||||||||||||||||||||||
Sbjct: 8 cgtggtcaaatgctcaggctcc-gtggtagttgattatgcaccacggatgtttgagcatt 66
Query: 68 tgctatggtgtcta 81
| | ||||||||||
Sbjct: 67 tacaatggtgtcta 80
>RF00670;mir-105;AANG01759982.1/244-164 9685:Felis catus (domestic
cat)
Length = 81
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 30 tgtggtggctgcttatgcaccacggatgtttga 62
|||||||||||||||||||||| ||||||||||
Sbjct: 30 tgtggtggctgcttatgcaccatggatgtttga 62
>RF00670;mir-105;ABRT010308690.1/936-856 9478:Tarsius syrichta
(Philippine tarsier)
Length = 81
Score = 54.0 bits (27), Expect = 3e-07
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 11 ggtcaaatgctcagactcctgtggtggctgcttatgcaccacggatgtttg 61
|||||||| || |||| ||||||||||||||||||||||| | |||||||
Sbjct: 12 ggtcaaatattctgactactgtggtggctgcttatgcaccatgaatgtttg 62
>RF00670;mir-105;ABRO01195452.1/8720-8641 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 80
Score = 54.0 bits (27), Expect = 3e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 29 ctgtggtggctgcttatgcaccacggatgtttgagcatg 67
||||||||||||||||||||||| |||||| ||| ||||
Sbjct: 28 ctgtggtggctgcttatgcaccatggatgtgtgaccatg 66
>RF00670;mir-105;AAWR02040596.1/7734-7654 9796:Equus caballus
(horse)
Length = 81
Score = 52.0 bits (26), Expect = 1e-06
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 9 gtggtcaaatgctcagactcctgtggtggctgcttatgcaccacggatgtttga 62
||||||||||| || |||| ||||| |||||||| |||||| | ||||||||||
Sbjct: 9 gtggtcaaatgttctgactgctgtgctggctgctcatgcactatggatgtttga 62
>RF00670;mir-105;AAEX02003804.1/4224-4304 9615:Canis lupus
familiaris (dog)
Length = 81
Score = 52.0 bits (26), Expect = 1e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 29 ctgtggtggctgcttatgcaccacggatgtttga 62
|||||||||||||| ||||||| |||||||||||
Sbjct: 29 ctgtggtggctgctcatgcacctcggatgtttga 62
>RF00670;mir-105;AALT01106831.1/106-184 42254:Sorex araneus
(European shrew)
Length = 79
Score = 50.1 bits (25), Expect = 4e-06
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 41 cttatgcaccacggatgtttgagcatgtgctatggtgtcta 81
|||||||||| ||||| ||||||||||||||| |||||||
Sbjct: 39 cttatgcaccgtggatgcttgagcatgtgctattgtgtcta 79
>RF00670;mir-105;AANN01683306.1/428-348 9365:Erinaceus europaeus
(western European hedgehog)
Length = 81
Score = 48.1 bits (24), Expect = 2e-05
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 7 tcgtggtcaaatgctcagactcctgtggtggctgcttatgcaccacggatgtttgagcat 66
|||| |||||||||||||| |||||| |||||| || ||| || || | ||| |||||||
Sbjct: 7 tcgtagtcaaatgctcagattcctgtagtggcttctgatgtactacagctgtctgagcat 66
Query: 67 gtgc 70
||||
Sbjct: 67 gtgc 70
>RF00670;mir-105;ABRQ01630446.1/1144-1065 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 44.1 bits (22), Expect = 3e-04
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 13 tcaaatgctcagactcctgtggtggctgcttatgcaccacggatgtttgagcat 66
|||| |||||||||| |||| || |||||| ||||| || |||||||||||||
Sbjct: 13 tcaattgctcagacttctgtagtagctgctgatgcatcatagatgtttgagcat 66
