miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00684;mir-122;AAWZ01008604.1/2344-2417 28377:Anolis
carolinensis (green anole)
Length = 74
Score = 103 bits (52), Expect = 3e-22
Identities = 67/72 (93%)
Strand = Plus / Plus
Query: 9 gagctgtggagtgtgacaatggtgtttgtgtctaaactatcaaacgccattatcacacta 68
||||||||||||||||||||||||||||| || || | |||||||||||||||||||||
Sbjct: 3 gagctgtggagtgtgacaatggtgtttgtatccaatccgtcaaacgccattatcacacta 62
Query: 69 aatagctactgc 80
||||||||||||
Sbjct: 63 aatagctactgc 74
>RF00684;mir-122;BAAE01201314.1/775-848 8090:Oryzias latipes
(Japanese medaka)
Length = 74
Score = 101 bits (51), Expect = 1e-21
Identities = 66/71 (92%)
Strand = Plus / Plus
Query: 7 cagagctgtggagtgtgacaatggtgtttgtgtctaaactatcaaacgccattatcacac 66
||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 1 cagagctgtggagtgtgacaatggtgtttgtttcctgcctatcaaacgccattatcacac 60
Query: 67 taaatagctac 77
|||||||||||
Sbjct: 61 taaatagctac 71
>RF00684;mir-122;AABR04103114.1/951-878 10116:Rattus norvegicus
(Norway rat)
Length = 74
Score = 99.6 bits (50), Expect = 5e-21
Identities = 68/74 (91%)
Strand = Plus / Plus
Query: 7 cagagctgtggagtgtgacaatggtgtttgtgtctaaactatcaaacgccattatcacac 66
||||||| |||||||||||||||||||||||||| ||| |||||||||||| |||||||
Sbjct: 1 cagagctctggagtgtgacaatggtgtttgtgtccaaaacatcaaacgccatcatcacac 60
Query: 67 taaatagctactgc 80
|||| |||||||||
Sbjct: 61 taaacagctactgc 74
>RF00684;mir-122;CR925730.6/26724-26798 7955:Danio rerio
(zebrafish)
Length = 75
Score = 67.9 bits (34), Expect = 2e-11
Identities = 63/71 (88%), Gaps = 5/71 (7%)
Strand = Plus / Plus
Query: 7 cagagctgtggagtgtgacaatggtgtttgtgtctaaact---atcaaacgccattatca 63
||||||||||||||||||||||||||||||| || | || ||||||||||||||||
Sbjct: 1 cagagctgtggagtgtgacaatggtgtttgtatc--atctgtcgtcaaacgccattatca 58
Query: 64 cactaaatagc 74
|||||||||||
Sbjct: 59 cactaaatagc 69
>RF00684;mir-122;AAVX01098255.1/690-764 7868:Callorhinchus milii
(ghost shark)
Length = 75
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 47 atcaaacgccattatcacactaaata 72
||||||||||||||||||||||||||
Sbjct: 42 atcaaacgccattatcacactaaata 67
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 tggagtgtgacaatggtgtttgt 37
|||||||||||||||||||||||
Sbjct: 9 tggagtgtgacaatggtgtttgt 31
