miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00640;MIR167_1;AARH01012195.1/26948-26514 3694:Populus
          trichocarpa
          Length = 435

 Score = 58.0 bits (29), Expect = 1e-07
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 18 agaggttgaagctgccagcatgatctggt 46
          |||||||||||||||||||||||||||||
Sbjct: 8  agaggttgaagctgccagcatgatctggt 36




>RF00640;MIR167_1;AC212802.1/77650-78085 3694:Populus trichocarpa
          Length = 436

 Score = 58.0 bits (29), Expect = 1e-07
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 18 agaggttgaagctgccagcatgatctggt 46
          |||||||||||||||||||||||||||||
Sbjct: 8  agaggttgaagctgccagcatgatctggt 36




>RF00640;MIR167_1;BABK01002345.1/2496-2649 34305:Lotus japonicus
          Length = 154

 Score = 58.0 bits (29), Expect = 1e-07
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 18 agaggttgaagctgccagcatgatctggt 46
          |||||||||||||||||||||||||||||
Sbjct: 8  agaggttgaagctgccagcatgatctggt 36




>RF00640;MIR167_1;CAAP02000801.1/49293-49646 29760:Vitis vinifera
          Length = 354

 Score = 58.0 bits (29), Expect = 1e-07
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 18 agaggttgaagctgccagcatgatctggt 46
          |||||||||||||||||||||||||||||
Sbjct: 8  agaggttgaagctgccagcatgatctggt 36




>RF00640;MIR167_1;ABXC01006864.1/41201-41318 4558:Sorghum bicolor
          (sorghum)
          Length = 118

 Score = 58.0 bits (29), Expect = 1e-07
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 18 agaggttgaagctgccagcatgatctggt 46
          |||||||||||||||||||||||||||||
Sbjct: 8  agaggttgaagctgccagcatgatctggt 36




>RF00640;MIR167_1;ABXC01002438.1/140052-139788 4558:Sorghum
          bicolor (sorghum)
          Length = 265

 Score = 54.0 bits (27), Expect = 2e-06
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 18 agaggttgaagctgccagcatgatctg 44
          |||||||||||||||||||||||||||
Sbjct: 8  agaggttgaagctgccagcatgatctg 34




>RF00640;MIR167_1;AAAA02020690.1/41483-41278 39946:Oryza sativa
          Indica Group
          Length = 206

 Score = 52.0 bits (26), Expect = 8e-06
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 18 agaggttgaagctgccagcatgatctggtc 47
          ||||| ||||||||||||||||||||||||
Sbjct: 8  agaggctgaagctgccagcatgatctggtc 37




>RF00640;MIR167_1;AASG02013372.1/3243-2901 3988:Ricinus communis
          (castor bean)
          Length = 343

 Score = 50.1 bits (25), Expect = 3e-05
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 18 agaggttgaagctgccagcatgatctggt 46
          |||| ||||||||||||||||||||||||
Sbjct: 8  agagattgaagctgccagcatgatctggt 36




>RF00640;MIR167_1;AASG02001065.1/6152-6064 3988:Ricinus communis
          (castor bean)
          Length = 89

 Score = 48.1 bits (24), Expect = 1e-04
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 22 gttgaagctgccagcatgatctgg 45
          ||||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatctgg 35




>RF00640;MIR167_1;EU952646.1/178-293 4577:Zea mays
          Length = 116

 Score = 48.1 bits (24), Expect = 1e-04
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 18 agaggttgaagctgccagcatgatctgg 45
          |||| |||||||||||||||||||||||
Sbjct: 8  agagcttgaagctgccagcatgatctgg 35




>RF00640;MIR167_1;ABIM01018604.1/478-580 3649:Carica papaya
          (papaya)
          Length = 103

 Score = 46.1 bits (23), Expect = 5e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 22 gttgaagctgccagcatgatctg 44
          |||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatctg 34




>RF00640;MIR167_1;EU549029.1/122-486 3702:Arabidopsis thaliana
          (thale cress)
          Length = 365

 Score = 46.1 bits (23), Expect = 5e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 24 tgaagctgccagcatgatctggt 46
          |||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctggt 36




>RF00640;MIR167_1;EU549031.1/122-508 3702:Arabidopsis thaliana
          (thale cress)
          Length = 387

 Score = 46.1 bits (23), Expect = 5e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 24 tgaagctgccagcatgatctggt 46
          |||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctggt 36




>RF00640;MIR167_1;EU549010.1/122-488 3702:Arabidopsis thaliana
          (thale cress)
          Length = 367

 Score = 46.1 bits (23), Expect = 5e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 24 tgaagctgccagcatgatctggt 46
          |||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctggt 36




>RF00640;MIR167_1;AARH01008931.1/3492-3395 3694:Populus
          trichocarpa
          Length = 98

 Score = 46.1 bits (23), Expect = 5e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 22 gttgaagctgccagcatgatctg 44
          |||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatctg 34




>RF00640;MIR167_1;BT062276.1/99-327 4577:Zea mays
          Length = 229

 Score = 46.1 bits (23), Expect = 5e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 24 tgaagctgccagcatgatctggt 46
          |||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctggt 36




>RF00640;MIR167_1;EU944277.1/110-337 4577:Zea mays
          Length = 228

 Score = 46.1 bits (23), Expect = 5e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 24 tgaagctgccagcatgatctggt 46
          |||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctggt 36




>RF00640;MIR167_1;AACV01003428.1/8526-8249 39947:Oryza sativa
          Japonica Group
          Length = 278

 Score = 46.1 bits (23), Expect = 5e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 24 tgaagctgccagcatgatctggt 46
          |||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctggt 36




>RF00640;MIR167_1;AY551235.1/11-128 4530:Oryza sativa (rice)
          Length = 118

 Score = 46.1 bits (23), Expect = 5e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 456 catcagatcatctggcagtttca 478
           |||||||||||||||||||||||
Sbjct: 84  catcagatcatctggcagtttca 106