miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00648;MIR396;AARH01007577.1/188194-188047 3694:Populus
trichocarpa
Length = 148
Score = 65.9 bits (33), Expect = 1e-10
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 71 catggaagctcaagaaagctgtgggaaaacatggcaa 107
|||||||||||||||||||||||||| ||||||||||
Sbjct: 112 catggaagctcaagaaagctgtgggagaacatggcaa 148
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 1 gtcatgctattccacagctttcttgaactt 30
|||||||| |||||||||||||||||||||
Sbjct: 2 gtcatgcttttccacagctttcttgaactt 31
>RF00648;MIR396;FM164183.1/100-235 3702:Arabidopsis thaliana (thale
cress)
Length = 136
Score = 61.9 bits (31), Expect = 2e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 73 tggaagctcaagaaagctgtgggaaaacatg 103
|||||||||||||||||||||||||||||||
Sbjct: 102 tggaagctcaagaaagctgtgggaaaacatg 132
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 1 gtcatgctattccacagctttcttgaactttctt 34
||||| || |||||||||||||||||||||||||
Sbjct: 2 gtcatacttttccacagctttcttgaactttctt 35
>RF00648;MIR396;AARH01002977.1/33014-32858 3694:Populus trichocarpa
Length = 157
Score = 58.0 bits (29), Expect = 3e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 71 catggaagctcaagaaagctgtgggaaaacatggcaa 107
||||||||||||||||||| |||||| ||||||||||
Sbjct: 121 catggaagctcaagaaagccgtgggagaacatggcaa 157
Score = 54.0 bits (27), Expect = 4e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 1 gtcatgctattccacagctttcttgaactttcttg 35
|||||||| ||||||||||||||||||||| ||||
Sbjct: 2 gtcatgcttttccacagctttcttgaacttccttg 36
>RF00648;MIR396;CAAP02000221.1/3577-3471 29760:Vitis vinifera
Length = 107
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 78 gctcaagaaagctgtgggaaaacatgg 104
|||||||||||||||||||||||||||
Sbjct: 78 gctcaagaaagctgtgggaaaacatgg 104
>RF00648;MIR396;AARH01001850.1/327743-327639 3694:Populus
trichocarpa
Length = 105
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 1 gtcatgctattccacagctttcttgaactt 30
||||||||||||||| ||||||||||||||
Sbjct: 2 gtcatgctattccacggctttcttgaactt 31
Score = 50.1 bits (25), Expect = 7e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 74 ggaagctcaagaaagctgtgggaaaacatggca 106
||||| ||||||||||||||| |||||||||||
Sbjct: 72 ggaagttcaagaaagctgtggaaaaacatggca 104
>RF00648;MIR396;AASG02001279.1/18109-18241 3988:Ricinus communis
(castor bean)
Length = 133
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 1 gtcatgctattccacagctttcttgaactt 30
|||||||| |||||||||||||||||||||
Sbjct: 2 gtcatgcttttccacagctttcttgaactt 31
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 80 tcaagaaagctgtgggaaaacatggcaa 107
||||||||||||||||| ||||||||||
Sbjct: 106 tcaagaaagctgtgggagaacatggcaa 133
>RF00648;MIR396;AC153121.15/48150-48253 3880:Medicago truncatula
(barrel medic)
Length = 104
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 1 gtcatgctattccacagctttcttgaactt 30
|||||||| |||||||||||||||||||||
Sbjct: 2 gtcatgcttttccacagctttcttgaactt 31
Score = 50.1 bits (25), Expect = 7e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 75 gaagctcaagaaagctgtgggaaaacatggcaa 107
|||||||||||||||||||||| || |||||||
Sbjct: 72 gaagctcaagaaagctgtgggagaatatggcaa 104
>RF00648;MIR396;AP010531.1/73143-73036 34305:Lotus japonicus
Length = 108
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 1 gtcatgctattccacagctttcttgaactt 30
|||||||| |||||||||||||||||||||
Sbjct: 2 gtcatgcttttccacagctttcttgaactt 31
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 75 gaagctcaagaaagctgtgggaaaacatggca 106
||||||||||||||| ||||||||| ||||||
Sbjct: 76 gaagctcaagaaagccgtgggaaaatatggca 107
>RF00648;MIR396;ABIM01011222.1/17767-17925 3649:Carica papaya
(papaya)
Length = 159
Score = 50.1 bits (25), Expect = 7e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 75 gaagctcaagaaagctgtgggaaaacatggcaa 107
|||||||||||||||||||||| |||||||||
Sbjct: 127 gaagctcaagaaagctgtgggaggacatggcaa 159
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 1 gtcatgctattccacagctttcttgaactt 30
|||||| | |||||||||||||||||||||
Sbjct: 2 gtcatgtttttccacagctttcttgaactt 31
>RF00648;MIR396;CAAP02000554.1/84783-84895 29760:Vitis vinifera
Length = 113
Score = 50.1 bits (25), Expect = 7e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1 gtcatgctattccacagctttcttgaact 29
|||||||| ||||||||||||||||||||
Sbjct: 2 gtcatgcttttccacagctttcttgaact 30
Score = 50.1 bits (25), Expect = 7e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 75 gaagctcaagaaagctgtgggaaaacatggcaa 107
|||||||||||||||||||||| |||||||||
Sbjct: 81 gaagctcaagaaagctgtgggaggacatggcaa 113
>RF00648;MIR396;AC226039.1/69968-70054 4641:Musa acuminata
Length = 87
Score = 50.1 bits (25), Expect = 7e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 76 aagctcaagaaagctgtgggaaaacatgg 104
||||||||||||| |||||||||||||||
Sbjct: 56 aagctcaagaaagttgtgggaaaacatgg 84
>RF00648;MIR396;AM489352.2/13768-13664 29760:Vitis vinifera
Length = 105
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 3 catgctattccacagctttcttgaactt 30
|||||| |||||||||||||||||||||
Sbjct: 4 catgcttttccacagctttcttgaactt 31
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 75 gaagctcaagaaagctgtgggaaaacatggc 105
|||| ||||||||||||||||||| ||||||
Sbjct: 73 gaagttcaagaaagctgtgggaaaccatggc 103
>RF00648;MIR396;FJ085642.1/369-262 3352:Pinus taeda (loblolly
pine)
Length = 108
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 gtcatgctattccacagctttcttgaacttt 31
||||| || ||||||||||||||||||||||
Sbjct: 2 gtcatacttttccacagctttcttgaacttt 32
