miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00641;mir-154;ABRQ01054372.1/2194-2273 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 135 bits (68), Expect = 7e-32
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 1 taaaaggtagattctccttctatgagtacattatttatgattaatcatagaggaaaatcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7 taaaaggtagattctccttctatgagtacattatttatgattaatcatagaggaaaatcc 66
Query: 61 acgttttc 68
||||||||
Sbjct: 67 acgttttc 74
>RF00641;mir-154;AAIY01443497.1/2027-2105 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 79
Score = 63.9 bits (32), Expect = 2e-10
Identities = 60/68 (88%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 1 taaaaggtagattctccttctatgagtacattatttatgattaatcatagaggaaaatcc 60
||||||||||||| ||||| |||| ||| || || ||| ||||||||||||||||||||
Sbjct: 7 taaaaggtagattttccttttatggttacgtt-ttgatggttaatcatagaggaaaatcc 65
Query: 61 acgttttc 68
||||||||
Sbjct: 66 acgttttc 73
>RF00641;mir-154;AADB02234032.1/262-341 9606:Homo sapiens (human)
Length = 80
Score = 61.9 bits (31), Expect = 9e-10
Identities = 55/63 (87%)
Strand = Plus / Plus
Query: 6 ggtagattctccttctatgagtacattatttatgattaatcatagaggaaaatccacgtt 65
|||||||| |||||||||| ||| | || ||| |||||||||||||||||||||||||
Sbjct: 12 ggtagattttccttctatggttacgtgtttgatggttaatcatagaggaaaatccacgtt 71
Query: 66 ttc 68
|||
Sbjct: 72 ttc 74
>RF00641;mir-154;AANU01197805.1/77711-77790 9544:Macaca mulatta
(rhesus monkey)
Length = 80
Score = 60.0 bits (30), Expect = 4e-09
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 1 taaaaggtagattctccttctatgagtacattatttatgattaatcatagaggaaaatcc 60
|||||||| ||| |||||||||| |||| ||||||| ||||||||||||||||||||
Sbjct: 7 taaaaggtggatgttccttctatgcttacaggatttatggttaatcatagaggaaaatcc 66
Query: 61 ac 62
||
Sbjct: 67 ac 68
>RF00641;mir-154;AANG01662501.1/383-463 9685:Felis catus (domestic
cat)
Length = 81
Score = 56.0 bits (28), Expect = 6e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 41 ttaatcatagaggaaaatccacgttttc 68
||||||||||||||||||||||||||||
Sbjct: 48 ttaatcatagaggaaaatccacgttttc 75
>RF00641;mir-154;AAGW01206553.1/1248-1327 9986:Oryctolagus
cuniculus (rabbit)
Length = 80
Score = 56.0 bits (28), Expect = 6e-08
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 1 taaaaggtagattctccttctatgagtacattatttatgattaatcatagaggaaaatcc 60
|||||||| |||| |||||||||| ||| | ||| || ||||||||||||||||||||
Sbjct: 7 taaaaggtggattttccttctatgtttacgtgattgctggttaatcatagaggaaaatcc 66
Query: 61 acgttttc 68
| ||||||
Sbjct: 67 atgttttc 74
>RF00641;mir-154;AAEX02019639.1/145777-145856 9615:Canis lupus
familiaris (dog)
Length = 80
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 41 ttaatcatagaggaaaatccacgtttt 67
|||||||||||||||||||||||||||
Sbjct: 47 ttaatcatagaggaaaatccacgtttt 73
>RF00641;mir-154;ABDC01257673.1/7254-7333 30608:Microcebus murinus
(gray mouse lemur)
Length = 80
Score = 54.0 bits (27), Expect = 2e-07
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 2 aaaaggtagattctccttctatgagtacattatttatgattaatcatagaggaaaatcca 61
||||||| ||| |||||||||| |||| |||| || |||||||||||||||||||||
Sbjct: 8 aaaaggtggatgttccttctatgtttacaggatttgtggttaatcatagaggaaaatcca 67
Query: 62 cgttttc 68
| |||||
Sbjct: 68 cattttc 74
>RF00641;mir-154;ABRT010163748.1/957-1036 9478:Tarsius syrichta
(Philippine tarsier)
Length = 80
Score = 54.0 bits (27), Expect = 2e-07
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 2 aaaaggtagattctccttctatgagtacattatttatgattaatcatagaggaaaatcca 61
||||||| ||| |||||||||| |||| |||||| |||||||||||||||||||||
Sbjct: 8 aaaaggtggatattccttctatgtttacagaatttatagttaatcatagaggaaaatcca 67
Query: 62 cgttttc 68
| |||||
Sbjct: 68 cattttc 74
>RF00641;mir-154;AAQR01332677.1/6164-6240 30611:Otolemur garnettii
(small-eared galago)
Length = 77
Score = 50.1 bits (25), Expect = 3e-06
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 15 tccttctatgagtacattatttatgattaatcatagaggaaaatccacgtttt 67
|||||||||| |||| ||||||| |||||||||||||||||| ||| ||||
Sbjct: 18 tccttctatgtttacaggatttatggttaatcatagaggaaaattcacatttt 70
>RF00641;mir-154;ABRP01151523.1/16147-16226 132908:Pteropus
vampyrus (large flying fox)
Length = 80
Score = 48.1 bits (24), Expect = 1e-05
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 3 aaaggtagattctccttctatgagtacattatttatgattaatcatagaggaaaatccac 62
|||||| |||| |||||||||| |||| |||||| |||| |||||||||||||||||
Sbjct: 9 aaaggtggattttccttctatgtttacagggtttatggttaagcatagaggaaaatccac 68
>RF00641;mir-154;AAYZ01424898.1/1376-1455 9978:Ochotona princeps
(American pika)
Length = 80
Score = 48.1 bits (24), Expect = 1e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 41 ttaatcatagaggaaaatccacgttttc 68
|||||||||||||||| |||||||||||
Sbjct: 47 ttaatcatagaggaaattccacgttttc 74
>RF00641;mir-154;AAGW01206553.1/954-1033 9986:Oryctolagus
cuniculus (rabbit)
Length = 80
Score = 48.1 bits (24), Expect = 1e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 41 ttaatcatagaggaaaatccacgttttc 68
|||||||||||||||||||||| |||||
Sbjct: 47 ttaatcatagaggaaaatccacattttc 74
>RF00641;mir-154;ABRQ01054372.1/1100-1179 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 48.1 bits (24), Expect = 1e-05
Identities = 57/68 (83%)
Strand = Plus / Plus
Query: 1 taaaaggtagattctccttctatgagtacattatttatgattaatcatagaggaaaatcc 60
|||||||| ||| |||||||||| || ||||||||| |||| ||||||||||| |||
Sbjct: 7 taaaaggtggatattccttctatgtttatgttatttatggttaaacatagaggaaattcc 66
Query: 61 acgttttc 68
|| |||||
Sbjct: 67 acattttc 74
>RF00641;mir-154;ABRQ01054372.1/1857-1937 9813:Procavia capensis
(cape rock hyrax)
Length = 81
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 41 ttaatcatagaggaaaatcca 61
|||||||||||||||||||||
Sbjct: 48 ttaatcatagaggaaaatcca 68
