miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00641;mir-154;AADB02234032.1/262-341 9606:Homo sapiens (human)
Length = 80
Score = 137 bits (69), Expect = 2e-32
Identities = 69/69 (100%)
Strand = Plus / Plus
Query: 12 ggtagattttccttctatggttacgtgtttgatggttaatcatagaggaaaatccacgtt 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 ggtagattttccttctatggttacgtgtttgatggttaatcatagaggaaaatccacgtt 71
Query: 72 ttcagtatc 80
|||||||||
Sbjct: 72 ttcagtatc 80
>RF00641;mir-154;AAIY01443497.1/2027-2105 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 79
Score = 131 bits (66), Expect = 1e-30
Identities = 76/78 (97%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 1 ggtatttaaaaggtagattttccttctatggttacgtgtttgatggttaatcatagagga 60
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct: 1 ggtatttaaaaggtagattttccttttatggttacgt-tttgatggttaatcatagagga 59
Query: 61 aaatccacgttttcagta 78
||||||||||||||||||
Sbjct: 60 aaatccacgttttcagta 77
>RF00641;mir-154;AAGW01206553.1/1248-1327 9986:Oryctolagus
cuniculus (rabbit)
Length = 80
Score = 119 bits (60), Expect = 5e-27
Identities = 75/80 (93%)
Strand = Plus / Plus
Query: 1 ggtatttaaaaggtagattttccttctatggttacgtgtttgatggttaatcatagagga 60
|||||||||||||| ||||||||||||||| ||||||| ||| |||||||||||||||||
Sbjct: 1 ggtatttaaaaggtggattttccttctatgtttacgtgattgctggttaatcatagagga 60
Query: 61 aaatccacgttttcagtatc 80
||||||| ||||||||||||
Sbjct: 61 aaatccatgttttcagtatc 80
>RF00641;mir-154;AAGW01206553.1/954-1033 9986:Oryctolagus
cuniculus (rabbit)
Length = 80
Score = 111 bits (56), Expect = 1e-24
Identities = 74/80 (92%)
Strand = Plus / Plus
Query: 1 ggtatttaaaaggtagattttccttctatggttacgtgtttgatggttaatcatagagga 60
|||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||
Sbjct: 1 ggtatttaaaaggtagattttccttcaatgattacgtgttgcctggttaatcatagagga 60
Query: 61 aaatccacgttttcagtatc 80
|||||||| |||||||||||
Sbjct: 61 aaatccacattttcagtatc 80
>RF00641;mir-154;CAAA01088157.1/21210-21131 10090:Mus musculus
(house mouse)
Length = 80
Score = 95.6 bits (48), Expect = 8e-20
Identities = 72/80 (90%)
Strand = Plus / Plus
Query: 1 ggtatttaaaaggtagattttccttctatggttacgtgtttgatggttaatcatagagga 60
|||||||||||||| ||| ||||||||||||||||||| || ||| |||||||||||||
Sbjct: 1 ggtatttaaaaggtggatattccttctatggttacgtgcttcctggataatcatagagga 60
Query: 61 aaatccacgttttcagtatc 80
| |||||| |||||||||||
Sbjct: 61 acatccactttttcagtatc 80
>RF00641;mir-154;ABRQ01054372.1/2194-2273 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 95.6 bits (48), Expect = 8e-20
Identities = 72/80 (90%)
Strand = Plus / Plus
Query: 1 ggtatttaaaaggtagattttccttctatggttacgtgtttgatggttaatcatagagga 60
||||||||||||||||||| |||||||||| ||| | || ||| ||||||||||||||
Sbjct: 1 ggtatttaaaaggtagattctccttctatgagtacattatttatgattaatcatagagga 60
Query: 61 aaatccacgttttcagtatc 80
||||||||||||||||||||
Sbjct: 61 aaatccacgttttcagtatc 80
>RF00641;mir-154;AAYZ01424898.1/1376-1455 9978:Ochotona princeps
(American pika)
Length = 80
Score = 79.8 bits (40), Expect = 5e-15
Identities = 70/80 (87%)
Strand = Plus / Plus
Query: 1 ggtatttaaaaggtagattttccttctatggttacgtgtttgatggttaatcatagagga 60
|||||||||||||| ||||||||||| ||| |||| |||| | ||||||||||||||
Sbjct: 1 ggtatttaaaaggtggattttccttccatgattacatgttgccttcttaatcatagagga 60
Query: 61 aaatccacgttttcagtatc 80
|| |||||||||||||||||
Sbjct: 61 aattccacgttttcagtatc 80
>RF00641;mir-154;ABRQ01054372.1/1100-1179 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 79.8 bits (40), Expect = 5e-15
Identities = 70/80 (87%)
Strand = Plus / Plus
Query: 1 ggtatttaaaaggtagattttccttctatggttacgtgtttgatggttaatcatagagga 60
|||||||||||||| ||| ||||||||||| ||| || || |||||||| |||||||||
Sbjct: 1 ggtatttaaaaggtggatattccttctatgtttatgttatttatggttaaacatagagga 60
Query: 61 aaatccacgttttcagtatc 80
|| ||||| |||||||||||
Sbjct: 61 aattccacattttcagtatc 80
>RF00641;mir-154;AANU01197805.1/77711-77790 9544:Macaca mulatta
(rhesus monkey)
Length = 80
Score = 75.8 bits (38), Expect = 7e-14
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 7 taaaaggtagattttccttctatggttacgtgtttgatggttaatcatagaggaaaatcc 66
|||||||| ||| ||||||||||| |||| | || ||||||||||||||||||||||||
Sbjct: 7 taaaaggtggatgttccttctatgcttacaggatttatggttaatcatagaggaaaatcc 66
Query: 67 acgttttcagtatc 80
|| || ||||||||
Sbjct: 67 acattgtcagtatc 80
>RF00641;mir-154;AAKN02051949.1/111080-111159 10141:Cavia
porcellus (domestic guinea pig)
Length = 80
Score = 75.8 bits (38), Expect = 7e-14
Identities = 68/78 (87%)
Strand = Plus / Plus
Query: 1 ggtatttaaaaggtagattttccttctatggttacgtgtttgatggttaatcatagagga 60
|||||||||||||| ||||||||| ||||| ||| | || | |||||||||||| |||
Sbjct: 1 ggtatttaaaaggtggattttcctcctatgattatgcattggctggttaatcatacggga 60
Query: 61 aaatccacgttttcagta 78
||||||||||||||||||
Sbjct: 61 aaatccacgttttcagta 78
>RF00641;mir-154;ABRQ01054372.1/1857-1937 9813:Procavia capensis
(cape rock hyrax)
Length = 81
Score = 73.8 bits (37), Expect = 3e-13
Identities = 71/81 (87%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 1 ggtatttaaaaggtagattttccttctatggtt-acgtgtttgatggttaatcatagagg 59
|||||||||||||| ||||||||| ||||| || || || || ||||||||||||||||
Sbjct: 1 ggtatttaaaaggtggattttcctcctatgttttacatgcttcgtggttaatcatagagg 60
Query: 60 aaaatccacgttttcagtatc 80
|||||||| |||||||||||
Sbjct: 61 aaaatccatattttcagtatc 81
>RF00641;mir-154;AAEX02019639.1/145777-145856 9615:Canis lupus
familiaris (dog)
Length = 80
Score = 67.9 bits (34), Expect = 2e-11
Identities = 49/54 (90%)
Strand = Plus / Plus
Query: 20 ttccttctatggttacgtgtttgatggttaatcatagaggaaaatccacgtttt 73
||||||||||| ||||| | || || ||||||||||||||||||||||||||||
Sbjct: 20 ttccttctatgtttacgggatttatagttaatcatagaggaaaatccacgtttt 73
>RF00641;mir-154;ABDC01257673.1/7254-7333 30608:Microcebus murinus
(gray mouse lemur)
Length = 80
Score = 65.9 bits (33), Expect = 7e-11
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 8 aaaaggtagattttccttctatggttacgtgtttgatggttaatcatagaggaaaatcca 67
||||||| ||| ||||||||||| |||| | || ||||||||||||||||||||||||
Sbjct: 8 aaaaggtggatgttccttctatgtttacaggatttgtggttaatcatagaggaaaatcca 67
Query: 68 cgttttcag 76
| |||||||
Sbjct: 68 cattttcag 76
>RF00641;mir-154;ABRP01151523.1/16147-16226 132908:Pteropus
vampyrus (large flying fox)
Length = 80
Score = 63.9 bits (32), Expect = 3e-10
Identities = 53/60 (88%)
Strand = Plus / Plus
Query: 9 aaaggtagattttccttctatggttacgtgtttgatggttaatcatagaggaaaatccac 68
|||||| ||||||||||||||| |||| | || |||||||| |||||||||||||||||
Sbjct: 9 aaaggtggattttccttctatgtttacagggtttatggttaagcatagaggaaaatccac 68
>RF00641;mir-154;AANG01662501.1/383-463 9685:Felis catus (domestic
cat)
Length = 81
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 46 gttaatcatagaggaaaatccacgttttc 74
|||||||||||||||||||||||||||||
Sbjct: 47 gttaatcatagaggaaaatccacgttttc 75
>RF00641;mir-154;ABRT010163748.1/957-1036 9478:Tarsius syrichta
(Philippine tarsier)
Length = 80
Score = 58.0 bits (29), Expect = 2e-08
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 8 aaaaggtagattttccttctatggttacgtgtttgatggttaatcatagaggaaaatcca 67
||||||| ||| ||||||||||| |||| || || ||||||||||||||||||||||
Sbjct: 8 aaaaggtggatattccttctatgtttacagaatttatagttaatcatagaggaaaatcca 67
Query: 68 cgttttcag 76
| |||||||
Sbjct: 68 cattttcag 76
>RF00641;mir-154;ABRN01448850.1/16136-16215 9739:Tursiops
truncatus (bottlenosed dolphin)
Length = 80
Score = 54.0 bits (27), Expect = 3e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 46 gttaatcatagaggaaaatccacgttttcagtatc 80
||||| ||||||||||||||||| |||||||||||
Sbjct: 46 gttaagcatagaggaaaatccacattttcagtatc 80
>RF00641;mir-154;AAFC03087120.1/1987-1908 9913:Bos taurus (cattle)
Length = 80
Score = 52.0 bits (26), Expect = 1e-06
Identities = 65/78 (83%)
Strand = Plus / Plus
Query: 3 tatttaaaaggtagattttccttctatggttacgtgtttgatggttaatcatagaggaaa 62
|||| ||||||| ||| ||||||||||| |||| | |||| | ||| |||||||||||
Sbjct: 3 tattcaaaaggtggatattccttctatgtttacaggattgacagctaaacatagaggaaa 62
Query: 63 atccacgttttcagtatc 80
|||||| |||| ||||||
Sbjct: 63 atccacattttaagtatc 80
>RF00641;mir-154;AAQR01332677.1/6164-6240 30611:Otolemur garnettii
(small-eared galago)
Length = 77
Score = 52.0 bits (26), Expect = 1e-06
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 20 ttccttctatggttacgtgtttgatggttaatcatagaggaaaatccacgtttt 73
||||||||||| |||| | || |||||||||||||||||||||| ||| ||||
Sbjct: 17 ttccttctatgtttacaggatttatggttaatcatagaggaaaattcacatttt 70
>RF00641;mir-154;AANN01196583.1/1560-1639 9365:Erinaceus europaeus
(western European hedgehog)
Length = 80
Score = 48.1 bits (24), Expect = 2e-05
Identities = 66/80 (82%)
Strand = Plus / Plus
Query: 1 ggtatttaaaaggtagattttccttctatggttacgtgtttgatggttaatcatagagga 60
|||||||||||||| ||| || |||||||| ||| | || |||||||| | |||||||
Sbjct: 1 ggtatttaaaaggtggatatttcttctatgtttattggattcatggttaaacgtagagga 60
Query: 61 aaatccacgttttcagtatc 80
| ||||| |||||||||||
Sbjct: 61 agttccactttttcagtatc 80
>RF00641;mir-154;CABD01018504.1/18447-18522 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 76
Score = 46.1 bits (23), Expect = 7e-05
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 7 taaaaggtagattttccttctatggttacgtgtttgatggttaatcatagaggaa 61
|||||||| ||| ||||||||||| |||| | || ||||||||||| |||||||
Sbjct: 6 taaaaggtggatgttccttctatgcttacaggatttatggttaatcacagaggaa 60
>RF00641;mir-154;AAGV020362611.1/5630-5708 9361:Dasypus
novemcinctus (nine-banded armadillo)
Length = 79
Score = 44.1 bits (22), Expect = 3e-04
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 43 atggttaatcatagaggaaaatccacgttttcagtatc 80
|||||||||||||||||||| ||| | |||| ||||||
Sbjct: 42 atggttaatcatagaggaaactccccatttttagtatc 79
>RF00641;mir-154;AAPE01089191.1/159-237 59463:Myotis lucifugus
(little brown bat)
Length = 79
Score = 44.1 bits (22), Expect = 3e-04
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 1 ggtatttaaaaggtagattttccttctatggttacgtgtttgatggttaatcatagagga 60
|||||| ||||||||| |||||||||||| |||| | || ||||||| |||||||||
Sbjct: 1 ggtattgaaaaggtaggttttccttctattattacaggctttgtggttaaccatagagga 60
Query: 61 aa 62
||
Sbjct: 61 aa 62
>RF00641;mir-154;AAQR01332677.1/6513-6587 30611:Otolemur garnettii
(small-eared galago)
Length = 75
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 1 ggtatttaaaaggtagattttccttctatg 30
|||||||||||||| ||| |||||||||||
Sbjct: 1 ggtatttaaaaggtggatattccttctatg 30
