miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00641;mir-154;AAGW01206553.1/1248-1327 9986:Oryctolagus
cuniculus (rabbit)
Length = 80
Score = 135 bits (68), Expect = 1e-31
Identities = 77/80 (96%)
Strand = Plus / Plus
Query: 13 ggtatttaaaacgtggatattccttctatgtttacgtgattcctggttaatcatagagga 72
||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1 ggtatttaaaaggtggattttccttctatgtttacgtgattgctggttaatcatagagga 60
Query: 73 aaatccatgttttcagtatc 92
||||||||||||||||||||
Sbjct: 61 aaatccatgttttcagtatc 80
>RF00641;mir-154;CAAA01088157.1/21210-21131 10090:Mus musculus
(house mouse)
Length = 80
Score = 103 bits (52), Expect = 4e-22
Identities = 73/80 (91%)
Strand = Plus / Plus
Query: 13 ggtatttaaaacgtggatattccttctatgtttacgtgattcctggttaatcatagagga 72
||||||||||| |||||||||||||||||| ||||||| ||||||| |||||||||||||
Sbjct: 1 ggtatttaaaaggtggatattccttctatggttacgtgcttcctggataatcatagagga 60
Query: 73 aaatccatgttttcagtatc 92
| ||||| |||||||||||
Sbjct: 61 acatccactttttcagtatc 80
>RF00641;mir-154;ABRQ01054372.1/1857-1937 9813:Procavia capensis
(cape rock hyrax)
Length = 81
Score = 89.7 bits (45), Expect = 6e-18
Identities = 73/81 (90%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 13 ggtatttaaaacgtggatattccttctatgttt-acgtgattcctggttaatcatagagg 71
||||||||||| |||||| ||||| |||||||| || || ||| ||||||||||||||||
Sbjct: 1 ggtatttaaaaggtggattttcctcctatgttttacatgcttcgtggttaatcatagagg 60
Query: 72 aaaatccatgttttcagtatc 92
||||||||| |||||||||||
Sbjct: 61 aaaatccatattttcagtatc 81
>RF00641;mir-154;AAGW01206553.1/954-1033 9986:Oryctolagus
cuniculus (rabbit)
Length = 80
Score = 87.7 bits (44), Expect = 2e-17
Identities = 71/80 (88%)
Strand = Plus / Plus
Query: 13 ggtatttaaaacgtggatattccttctatgtttacgtgattcctggttaatcatagagga 72
||||||||||| || ||| ||||||| ||| ||||||| | |||||||||||||||||||
Sbjct: 1 ggtatttaaaaggtagattttccttcaatgattacgtgttgcctggttaatcatagagga 60
Query: 73 aaatccatgttttcagtatc 92
||||||| |||||||||||
Sbjct: 61 aaatccacattttcagtatc 80
>RF00641;mir-154;ABRQ01054372.1/1100-1179 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 87.7 bits (44), Expect = 2e-17
Identities = 71/80 (88%)
Strand = Plus / Plus
Query: 13 ggtatttaaaacgtggatattccttctatgtttacgtgattcctggttaatcatagagga 72
||||||||||| |||||||||||||||||||||| || ||| ||||||| |||||||||
Sbjct: 1 ggtatttaaaaggtggatattccttctatgtttatgttatttatggttaaacatagagga 60
Query: 73 aaatccatgttttcagtatc 92
|| |||| |||||||||||
Sbjct: 61 aattccacattttcagtatc 80
>RF00641;mir-154;AADB02234032.1/262-341 9606:Homo sapiens (human)
Length = 80
Score = 81.8 bits (41), Expect = 2e-15
Identities = 56/61 (91%)
Strand = Plus / Plus
Query: 32 ttccttctatgtttacgtgattcctggttaatcatagaggaaaatccatgttttcagtat 91
||||||||||| ||||||| || |||||||||||||||||||||||| |||||||||||
Sbjct: 20 ttccttctatggttacgtgtttgatggttaatcatagaggaaaatccacgttttcagtat 79
Query: 92 c 92
|
Sbjct: 80 c 80
>RF00641;mir-154;AAEX02019639.1/145777-145856 9615:Canis lupus
familiaris (dog)
Length = 80
Score = 73.8 bits (37), Expect = 4e-13
Identities = 55/61 (90%)
Strand = Plus / Plus
Query: 25 gtggatattccttctatgtttacgtgattcctggttaatcatagaggaaaatccatgttt 84
|||||| ||||||||||||||||| |||| | |||||||||||||||||||||| ||||
Sbjct: 13 gtggatgttccttctatgtttacgggatttatagttaatcatagaggaaaatccacgttt 72
Query: 85 t 85
|
Sbjct: 73 t 73
>RF00641;mir-154;ABDC01257673.1/7254-7333 30608:Microcebus murinus
(gray mouse lemur)
Length = 80
Score = 73.8 bits (37), Expect = 4e-13
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 20 aaaacgtggatattccttctatgtttacgtgattcctggttaatcatagaggaaaatcca 79
|||| |||||| |||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct: 8 aaaaggtggatgttccttctatgtttacaggatttgtggttaatcatagaggaaaatcca 67
Query: 80 tgttttcag 88
|||||||
Sbjct: 68 cattttcag 76
>RF00641;mir-154;AAYZ01424898.1/1376-1455 9978:Ochotona princeps
(American pika)
Length = 80
Score = 71.9 bits (36), Expect = 1e-12
Identities = 69/80 (86%)
Strand = Plus / Plus
Query: 13 ggtatttaaaacgtggatattccttctatgtttacgtgattcctggttaatcatagagga 72
||||||||||| |||||| ||||||| ||| |||| || | ||| ||||||||||||||
Sbjct: 1 ggtatttaaaaggtggattttccttccatgattacatgttgccttcttaatcatagagga 60
Query: 73 aaatccatgttttcagtatc 92
|| |||| ||||||||||||
Sbjct: 61 aattccacgttttcagtatc 80
>RF00641;mir-154;AANU01197805.1/77711-77790 9544:Macaca mulatta
(rhesus monkey)
Length = 80
Score = 67.9 bits (34), Expect = 2e-11
Identities = 64/74 (86%)
Strand = Plus / Plus
Query: 19 taaaacgtggatattccttctatgtttacgtgattcctggttaatcatagaggaaaatcc 78
||||| |||||| ||||||||||| |||| |||| |||||||||||||||||||||||
Sbjct: 7 taaaaggtggatgttccttctatgcttacaggatttatggttaatcatagaggaaaatcc 66
Query: 79 atgttttcagtatc 92
| || ||||||||
Sbjct: 67 acattgtcagtatc 80
>RF00641;mir-154;AAIY01443497.1/2027-2105 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 79
Score = 67.9 bits (34), Expect = 2e-11
Identities = 68/78 (87%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 13 ggtatttaaaacgtggatattccttctatgtttacgtgattcctggttaatcatagagga 72
||||||||||| || ||| |||||| |||| |||||| || |||||||||||||||||
Sbjct: 1 ggtatttaaaaggtagattttccttttatggttacgtt-ttgatggttaatcatagagga 59
Query: 73 aaatccatgttttcagta 90
||||||| ||||||||||
Sbjct: 60 aaatccacgttttcagta 77
>RF00641;mir-154;ABRT010163748.1/957-1036 9478:Tarsius syrichta
(Philippine tarsier)
Length = 80
Score = 65.9 bits (33), Expect = 9e-11
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 20 aaaacgtggatattccttctatgtttacgtgattcctggttaatcatagaggaaaatcca 79
|||| ||||||||||||||||||||||| ||| | ||||||||||||||||||||||
Sbjct: 8 aaaaggtggatattccttctatgtttacagaatttatagttaatcatagaggaaaatcca 67
Query: 80 tgttttcag 88
|||||||
Sbjct: 68 cattttcag 76
>RF00641;mir-154;AANN01196583.1/1560-1639 9365:Erinaceus europaeus
(western European hedgehog)
Length = 80
Score = 63.9 bits (32), Expect = 4e-10
Identities = 68/80 (85%)
Strand = Plus / Plus
Query: 13 ggtatttaaaacgtggatattccttctatgtttacgtgattcctggttaatcatagagga 72
||||||||||| ||||||||| |||||||||||| ||||| ||||||| | |||||||
Sbjct: 1 ggtatttaaaaggtggatatttcttctatgtttattggattcatggttaaacgtagagga 60
Query: 73 aaatccatgttttcagtatc 92
| |||| |||||||||||
Sbjct: 61 agttccactttttcagtatc 80
>RF00641;mir-154;AAQR01332677.1/6164-6240 30611:Otolemur garnettii
(small-eared galago)
Length = 77
Score = 63.9 bits (32), Expect = 4e-10
Identities = 47/52 (90%)
Strand = Plus / Plus
Query: 25 gtggatattccttctatgtttacgtgattcctggttaatcatagaggaaaat 76
|||||| |||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 10 gtggatgttccttctatgtttacaggatttatggttaatcatagaggaaaat 61
>RF00641;mir-154;ABRQ01054372.1/2194-2273 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 63.9 bits (32), Expect = 4e-10
Identities = 68/80 (85%)
Strand = Plus / Plus
Query: 13 ggtatttaaaacgtggatattccttctatgtttacgtgattcctggttaatcatagagga 72
||||||||||| || ||| |||||||||| ||| | ||| || ||||||||||||||
Sbjct: 1 ggtatttaaaaggtagattctccttctatgagtacattatttatgattaatcatagagga 60
Query: 73 aaatccatgttttcagtatc 92
||||||| ||||||||||||
Sbjct: 61 aaatccacgttttcagtatc 80
>RF00641;mir-154;AAQR01332677.1/6513-6587 30611:Otolemur garnettii
(small-eared galago)
Length = 75
Score = 56.0 bits (28), Expect = 9e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 13 ggtatttaaaacgtggatattccttctatgtt 44
||||||||||| ||||||||||||||||||||
Sbjct: 1 ggtatttaaaaggtggatattccttctatgtt 32
>RF00641;mir-154;ABRP01151523.1/16147-16226 132908:Pteropus
vampyrus (large flying fox)
Length = 80
Score = 54.0 bits (27), Expect = 3e-07
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 25 gtggatattccttctatgtttacgtgattcctggttaatcatagaggaaaatcca 79
|||||| |||||||||||||||| | || ||||||| ||||||||||||||||
Sbjct: 13 gtggattttccttctatgtttacagggtttatggttaagcatagaggaaaatcca 67
>RF00641;mir-154;AANG01662501.1/383-463 9685:Felis catus (domestic
cat)
Length = 81
Score = 54.0 bits (27), Expect = 3e-07
Identities = 55/63 (87%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 25 gtggatattccttctatgtttacgtga-ttcctggttaatcatagaggaaaatccatgtt 83
|||||| ||||||||||||||||| || || |||||||||||||||||||||| |||
Sbjct: 13 gtggatgttccttctatgtttacgggacttaacagttaatcatagaggaaaatccacgtt 72
Query: 84 ttc 86
|||
Sbjct: 73 ttc 75
>RF00641;mir-154;AAFC03087120.1/1987-1908 9913:Bos taurus (cattle)
Length = 80
Score = 52.0 bits (26), Expect = 1e-06
Identities = 65/78 (83%)
Strand = Plus / Plus
Query: 15 tatttaaaacgtggatattccttctatgtttacgtgattcctggttaatcatagaggaaa 74
|||| |||| ||||||||||||||||||||||| |||| | ||| |||||||||||
Sbjct: 3 tattcaaaaggtggatattccttctatgtttacaggattgacagctaaacatagaggaaa 62
Query: 75 atccatgttttcagtatc 92
||||| |||| ||||||
Sbjct: 63 atccacattttaagtatc 80
>RF00641;mir-154;ABRN01448850.1/16136-16215 9739:Tursiops
truncatus (bottlenosed dolphin)
Length = 80
Score = 52.0 bits (26), Expect = 1e-06
Identities = 65/78 (83%)
Strand = Plus / Plus
Query: 15 tatttaaaacgtggatattccttctatgtttacgtgattcctggttaatcatagaggaaa 74
|||| |||| |||||| ||||| |||||||||| |||| ||||| |||||||||||
Sbjct: 3 tattcaaaaagtggatgttcctcctatgtttacaggatttactgttaagcatagaggaaa 62
Query: 75 atccatgttttcagtatc 92
||||| |||||||||||
Sbjct: 63 atccacattttcagtatc 80
>RF00641;mir-154;AAKN02051949.1/111080-111159 10141:Cavia
porcellus (domestic guinea pig)
Length = 80
Score = 52.0 bits (26), Expect = 1e-06
Identities = 65/78 (83%)
Strand = Plus / Plus
Query: 13 ggtatttaaaacgtggatattccttctatgtttacgtgattcctggttaatcatagagga 72
||||||||||| |||||| ||||| ||||| ||| | | ||||||||||||| |||
Sbjct: 1 ggtatttaaaaggtggattttcctcctatgattatgcattggctggttaatcatacggga 60
Query: 73 aaatccatgttttcagta 90
||||||| ||||||||||
Sbjct: 61 aaatccacgttttcagta 78
>RF00641;mir-154;ABRQ01054372.1/730-809 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 52.0 bits (26), Expect = 1e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 20 aaaacgtggatattccttctatgtttacgtgatt 53
|||| |||||||||||||||||||||| ||||||
Sbjct: 8 aaaaggtggatattccttctatgtttatgtgatt 41
>RF00641;mir-154;CABD01018504.1/18447-18522 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 76
Score = 46.1 bits (23), Expect = 8e-05
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 19 taaaacgtggatattccttctatgtttacgtgattcctggttaatcatagaggaa 73
||||| |||||| ||||||||||| |||| |||| |||||||||| |||||||
Sbjct: 6 taaaaggtggatgttccttctatgcttacaggatttatggttaatcacagaggaa 60
>RF00641;mir-154;AAQQ01350195.1/120-198 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 79
Score = 44.1 bits (22), Expect = 3e-04
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 32 ttccttctatgtttacgtgattcctggttaatcataga 69
|||||||||||||||| ||||| ||||||| ||||||
Sbjct: 19 ttccttctatgtttacaagattcgtggttaaacataga 56
>RF00641;mir-154;AAGW01206553.1/392-471 9986:Oryctolagus cuniculus
(rabbit)
Length = 80
Score = 44.1 bits (22), Expect = 3e-04
Identities = 50/58 (86%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 13 ggtatttaaaacgtggatattccttctatgtttacgtgattcctggttaatcatagag 70
|||||| |||| |||||| |||||||||||| ||| ||| |||||||| ||||||||
Sbjct: 1 ggtattcaaaaggtggatgttccttctatgtccacg-gatccctggttattcatagag 57
