miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01960;SSU_rRNA_eukarya;AY557456.1/648-2413 61702:Cirrothauma
murrayi
Length = 1766
Score = 87.7 bits (44), Expect = 1e-17
Identities = 51/52 (98%), Gaps = 1/52 (1%)
Strand = Plus / Minus
Query: 4 gggccgacgtcgcatgctcc-ggccgccatggcggccgcgggaattcgatta 54
|||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1358 gggccgacgtcgcatgctcccggccgccatggcggccgcgggaattcgatta 1307
>RF01960;SSU_rRNA_eukarya;AJ133413.1/2-1645 89735:unidentified
myxozoan parasite
Length = 1644
Score = 58.0 bits (29), Expect = 1e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 25 gccgccatggcggccgcgggaattcgatt 53
|||||||||||||||||||||||||||||
Sbjct: 1 gccgccatggcggccgcgggaattcgatt 29
>RF00177;SSU_rRNA_bacteria;FM206302.1/1-1247 77133:uncultured
bacterium
Length = 1247
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 30 catggcggccgcgggaattcgatt 53
||||||||||||||||||||||||
Sbjct: 1247 catggcggccgcgggaattcgatt 1224
>RF00177;SSU_rRNA_bacteria;AM500850.1/1-1425 77133:uncultured
bacterium
Length = 1425
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 13 tcgcatgctccggccgccatggc 35
|||||||||||||||||||||||
Sbjct: 1413 tcgcatgctccggccgccatggc 1391
