miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00641;mir-154;AAIY01428934.1/1733-1815 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 83
Score = 125 bits (63), Expect = 7e-29
Identities = 66/67 (98%)
Strand = Plus / Plus
Query: 1 agagatggtagactatggaacgtaggcgttatgatttctgacctatgtaacatggtccac 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 10 agagatggtagactatggaacgtaggcgttatgatttttgacctatgtaacatggtccac 69
Query: 61 taactct 67
|||||||
Sbjct: 70 taactct 76
>RF00641;mir-154;ABRQ01054364.1/3334-3416 9813:Procavia capensis
(cape rock hyrax)
Length = 83
Score = 117 bits (59), Expect = 2e-26
Identities = 65/67 (97%)
Strand = Plus / Plus
Query: 1 agagatggtagactatggaacgtaggcgttatgatttctgacctatgtaacatggtccac 60
||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct: 10 agagatggtagactatggaacgtaggctttatgatttttgacctatgtaacatggtccac 69
Query: 61 taactct 67
|||||||
Sbjct: 70 taactct 76
>RF00641;mir-154;AAYZ01424895.1/367-448 9978:Ochotona princeps
(American pika)
Length = 82
Score = 109 bits (55), Expect = 4e-24
Identities = 64/67 (95%)
Strand = Plus / Plus
Query: 1 agagatggtagactatggaacgtaggcgttatgatttctgacctatgtaacatggtccac 60
|||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 9 agaggtggtagactatggaacgtaggcgttacgttttctgacctatgtaacatggtccac 68
Query: 61 taactct 67
|||||||
Sbjct: 69 taactct 75
>RF00641;mir-154;AAGV020362609.1/5811-5889 9361:Dasypus
novemcinctus (nine-banded armadillo)
Length = 79
Score = 42.1 bits (21), Expect = 8e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 39 tgacctatgtaacatggtccactaa 63
|||| ||||||||||||||||||||
Sbjct: 44 tgacgtatgtaacatggtccactaa 68
