miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00762;mir-412;CABD01018504.1/52208-52298 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 91
Score = 174 bits (88), Expect = 1e-43
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 4 gggtacggggatggatggtcgaccagttggaaagtaattgtttctaatgtacttcacctg 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 gggtacggggatggatggtcgaccagttggaaagtaattgtttctaatgtacttcacctg 63
Query: 64 gtccactagccgtccgtatccgctgcag 91
||||||||||||||||||||||||||||
Sbjct: 64 gtccactagccgtccgtatccgctgcag 91
>RF00762;mir-412;ABDC01257675.1/5683-5773 30608:Microcebus murinus
(gray mouse lemur)
Length = 91
Score = 121 bits (61), Expect = 2e-27
Identities = 76/81 (93%)
Strand = Plus / Plus
Query: 1 ctggggtacggggatggatggtcgaccagttggaaagtaattgtttctaatgtacttcac 60
|||||||| ||||| ||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 1 ctggggtatggggacggatggtcgaccagttggaaagtaattgtccccaatgtacttcac 60
Query: 61 ctggtccactagccgtccgta 81
|||||||||||||||||||||
Sbjct: 61 ctggtccactagccgtccgta 81
>RF00762;mir-412;AALT01091711.1/638-727 42254:Sorex araneus
(European shrew)
Length = 90
Score = 119 bits (60), Expect = 6e-27
Identities = 66/68 (97%)
Strand = Plus / Plus
Query: 12 ggatggatggtcgaccagttggaaagtaattgtttctaatgtacttcacctggtccacta 71
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 11 ggatggatggtcgaccagttggaaagtaattgtgtcgaatgtacttcacctggtccacta 70
Query: 72 gccgtccg 79
||||||||
Sbjct: 71 gccgtccg 78
>RF00762;mir-412;AAKN02051949.1/132908-132997 10141:Cavia
porcellus (domestic guinea pig)
Length = 90
Score = 115 bits (58), Expect = 1e-25
Identities = 61/62 (98%)
Strand = Plus / Plus
Query: 16 ggatggtcgaccagttggaaagtaattgtttctaatgtacttcacctggtccactagccg 75
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 15 ggatggtcgaccagttggaaagtaattgtctctaatgtacttcacctggtccactagccg 74
Query: 76 tc 77
||
Sbjct: 75 tc 76
>RF00762;mir-412;AAIY01437686.1/1059-969 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 91
Score = 115 bits (58), Expect = 1e-25
Identities = 70/74 (94%)
Strand = Plus / Plus
Query: 1 ctggggtacggggatggatggtcgaccagttggaaagtaattgtttctaatgtacttcac 60
||||||||||||||||| |||||||||||||||||||||||| ||| ||||||| |||||
Sbjct: 1 ctggggtacggggatggctggtcgaccagttggaaagtaattttttataatgtatttcac 60
Query: 61 ctggtccactagcc 74
||||||||||||||
Sbjct: 61 ctggtccactagcc 74
>RF00762;mir-412;ABRQ01054379.1/32-122 9813:Procavia capensis
(cape rock hyrax)
Length = 91
Score = 107 bits (54), Expect = 2e-23
Identities = 64/66 (96%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 12 ggatggatggtcgaccagttggaaagtaattgtttctaatgtacttcacctggtccacta 71
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct: 13 ggatggatggtcgaccagt-ggaaagtaattgtttataatgtacttcacctggtccacta 71
Query: 72 gccgtc 77
||||||
Sbjct: 72 gccgtc 77
>RF00762;mir-412;AANN01125401.1/69-157 9365:Erinaceus europaeus
(western European hedgehog)
Length = 89
Score = 50.1 bits (25), Expect = 5e-06
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 47 ctaatgtacttcacctggtccactagccgtccgtatccgctgcag 91
|||||| |||||||||| |||||||||||||| | ||| ||||||
Sbjct: 45 ctaatggacttcacctgctccactagccgtccctgtccactgcag 89
