miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00737;mir-322;AAKN02053360.1/159470-159387 10141:Cavia
porcellus (domestic guinea pig)
Length = 84
Score = 129 bits (65), Expect = 7e-30
Identities = 77/81 (95%)
Strand = Plus / Plus
Query: 1 cgaggggatacagcagcaattcatgttttgaagtgttctaaatggttcaaaacgtgaggc 60
||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct: 1 cgaggggatgcagcagcaattcatgttttgaagtattctaaactgttcaaaacgtgaggc 60
Query: 61 gctgctataccccctcgtggg 81
|||||||||||||||||||||
Sbjct: 61 gctgctataccccctcgtggg 81
>RF00737;mir-322;AAGU02249221.1/884-801 9785:Loxodonta africana
(African savanna elephant)
Length = 84
Score = 113 bits (57), Expect = 4e-25
Identities = 72/77 (93%)
Strand = Plus / Plus
Query: 1 cgaggggatacagcagcaattcatgttttgaagtgttctaaatggttcaaaacgtgaggc 60
||||||||| |||||||||||||||||||| |||| |||| | |||||||||||||||||
Sbjct: 1 cgaggggatgcagcagcaattcatgttttggagtgctctacaaggttcaaaacgtgaggc 60
Query: 61 gctgctataccccctcg 77
|||||||||||||||||
Sbjct: 61 gctgctataccccctcg 77
>RF00737;mir-322;AAGW01455164.1/423-340 9986:Oryctolagus cuniculus
(rabbit)
Length = 84
Score = 103 bits (52), Expect = 4e-22
Identities = 76/84 (90%)
Strand = Plus / Plus
Query: 1 cgaggggatacagcagcaattcatgttttgaagtgttctaaatggttcaaaacgtgaggc 60
||||||||| ||||||||||||||||||||||||| | | | | |||||||||||||||
Sbjct: 1 cgaggggatgcagcagcaattcatgttttgaagtgctatgattcattcaaaacgtgaggc 60
Query: 61 gctgctataccccctcgtggggaa 84
||||||||||||||||| ||||||
Sbjct: 61 gctgctataccccctcgcggggaa 84
>RF00737;mir-322;ABRQ01123748.1/1266-1183 9813:Procavia capensis
(cape rock hyrax)
Length = 84
Score = 81.8 bits (41), Expect = 2e-15
Identities = 68/77 (88%)
Strand = Plus / Plus
Query: 1 cgaggggatacagcagcaattcatgttttgaagtgttctaaatggttcaaaacgtgaggc 60
|||| |||| |||||||||||||||||||| | ||||||| | |||||||||||||| |
Sbjct: 1 cgagtggattcagcagcaattcatgttttggaatgttctacaaagttcaaaacgtgagtc 60
Query: 61 gctgctataccccctcg 77
|||||| ||||||||||
Sbjct: 61 gctgctctaccccctcg 77
>RF00737;mir-322;AAHY01210347.1/3510-3428 10090:Mus musculus
(house mouse)
Length = 83
Score = 52.0 bits (26), Expect = 1e-06
Identities = 63/74 (85%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 11 cagcagcaattcatgttttgaagtgttctaaatggttcaaaacgtgaggcgctgctatac 70
|||||||||||||||||||| ||| || || |||||||||| ||| ||||||| | ||
Sbjct: 11 cagcagcaattcatgttttggagtattgccaa-ggttcaaaacatgaagcgctgcaacac 69
Query: 71 cccctcgtggggaa 84
||| ||||||||||
Sbjct: 70 cccttcgtggggaa 83
>RF00737;mir-322;ABRO01386381.1/1280-1196 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 85
Score = 50.1 bits (25), Expect = 5e-06
Identities = 59/69 (85%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 2 gaggggatacagcagcaattcatgttttgaagtgttct-aaatggttcaaaacgtgaggc 60
||||| || |||||||||||||||||||| ||| | ||| |||||||||||||| ||
Sbjct: 2 gagggaatgcagcagcaattcatgttttggagtaccttgaaacggttcaaaacgtgaagc 61
Query: 61 gctgctata 69
|||||||||
Sbjct: 62 gctgctata 70
